Co-expression analysis

Gene ID Ta.4018.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=7e-4)
Module size 6 genes
NF 0.44
%ile 69.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.90Ta.4018.1.S1_atCD888469--7e-4At2g37540short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8092.20.91Ta.12323.1.A1_atBQ172096--6e+0Atcg00050-O.I.H.G.S.X.
0.6786.30.92Ta.28109.1.A1_atCA617283--8e-2At4g23430short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4767.90.89TaAffx.64816.1.A1_atBJ274338--4e+0At2g33800ribosomal protein S5 family proteinO.I.H.G.S.X.
0.2024.00.91Ta.7871.3.S1_a_atCA636480--7e-1At1g70470unknown proteinO.I.H.G.S.X.
0.1821.00.90AFFX-Tae-r2-Bs-lys-5_atAFFX-Tae-r2-Bs-lys-5---O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.996.1GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM111185genotype C22 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.094.3GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.893.6GSM298088Crown tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616237_s_at, orthologous to the query gene, Ta.4018.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6384.31616237_s_atAt2g37540hypothetical protein LOC100253030-7e-5At4g23420short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5577.31620532_atAt2g37540hypothetical protein LOC100240981-2e-43At5g13610unknown proteinO.I.H.G.S.X.
0.3853.61616536_atAt2g37540hypothetical protein LOC100249974-1e-10At3g08020protein binding / zinc ion bindingO.I.H.G.S.X.
0.3345.71620836_atAt2g37540hypothetical protein LOC100260803-1e-6At1g32500ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)O.I.H.G.S.X.
0.2327.51615906_atAt2g37540hypothetical protein LOC100248563-3e-3At2g47410nucleotide bindingO.I.H.G.S.X.
0.1718.21616447_atAt2g37540hypothetical protein LOC100242721-5e+0At5g25210unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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