CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.4018.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=7e-4)

Module size 6 genes

NF 0.44

%ile 69.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.90 Ta.4018.1.S1_at CD888469 - - 7e-4 At2g37540 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 92.2 0.91 Ta.12323.1.A1_at BQ172096 - - 6e+0 Atcg00050 - O.I. H.G. S.X.
0.67 86.3 0.92 Ta.28109.1.A1_at CA617283 - - 8e-2 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.47 67.9 0.89 TaAffx.64816.1.A1_at BJ274338 - - 4e+0 At2g33800 ribosomal protein S5 family protein O.I. H.G. S.X.
0.20 24.0 0.91 Ta.7871.3.S1_a_at CA636480 - - 7e-1 At1g70470 unknown protein O.I. H.G. S.X.
0.18 21.0 0.90 AFFX-Tae-r2-Bs-lys-5_at AFFX-Tae-r2-Bs-lys-5 - - - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 97.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0 96.3 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9 96.1 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5 95.4 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3 95.0 GSM111185 genotype C22 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0 94.3 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.8 93.6 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.10196.3.A1_a_at, orthologous to the query gene, Ta.4018.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 PtpAffx.10196.3.A1_a_at At2g37540 hypothetical protein - 5e-3 At2g37540 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.53 80.5 Ptp.2258.1.S1_at At2g37540 - - 2e+0 At2g21870 unknown protein O.I. H.G. S.X.
0.44 71.9 PtpAffx.16401.1.A1_at At2g37540 hypothetical protein - 4e-16 At1g78995 unknown protein O.I. H.G. S.X.
0.44 71.9 PtpAffx.1601.6.A1_a_at At2g37540 - - 6e-53 At2g39730 RCA (RUBISCO ACTIVASE) O.I. H.G. S.X.
0.35 59.7 Ptp.982.1.A1_s_at At2g37540 hypothetical protein - 5e-38 At5g16980 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.33 57.5 PtpAffx.25362.1.A1_at At2g37540 hypothetical protein - 1e-1 At3g54770 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.33 57.5 Ptp.943.1.A1_at At2g37540 hypothetical protein - 1e+0 At1g26590 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.22 38.3 PtpAffx.28344.1.S1_at At2g37540 hypothetical protein - 1e-14 At3g47860 apolipoprotein D-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage