Co-expression analysis

Gene ID	Ta.3990.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g67930: Golgi transport complex protein-related (HF=2e-5)
Module size	6 genes
NF	0.49
%ile	75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.98	Ta.3990.1.S1_at	BJ262866	-	-	2e-5	At1g67930	Golgi transport complex protein-related	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.98	Ta.13721.2.S1_x_at	CA708836	-	-	1e+1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.21119.1.S1_a_at	CD915118	-	-	3e-3	At3g63000	NPL41 (NPL4-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.28850.1.S1_at	BJ262711	-	-	1e-167	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.0	GSM138146	genotype G13 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.1	96.4	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM138161	genotype A91 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM111215	genotype C58 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM138183	genotype A10 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM111193	genotype F38a developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM111175	genotype G30 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM111179	genotype DH95 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6	92.9	GSM138191	genotype D39 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the grape gene, 1613127_at, orthologous to the query gene, Ta.3990.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1613127_at	At1g67930	hypothetical protein LOC100252080	-	1e-3	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.77	92.3	1607889_a_at	At1g67930	hypothetical protein LOC100249678	-	2e-51	At2g28760	NAD-dependent epimerase/dehydratase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611797_at	At1g67930	hypothetical protein LOC100257001	-	3e-38	At2g30060	Ran-binding protein 1b (RanBP1b)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1619779_at	At1g67930	hypothetical LOC100247281	-	4e-5	At1g57620	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1618957_at	At1g67930	hypothetical protein LOC100263857	-	6e-27	At3g46200	aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1619079_s_at	At1g67930	hypothetical protein LOC100240809	-	1e-79	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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