Co-expression analysis

Gene ID Ta.3990.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g67930: Golgi transport complex protein-related (HF=2e-5)
Module size 6 genes
NF 0.49
%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.00.98Ta.3990.1.S1_atBJ262866--2e-5At1g67930Golgi transport complex protein-relatedO.I.H.G.S.X.
0.5979.80.98Ta.13721.2.S1_x_atCA708836--1e+1At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.5072.40.98Ta.21119.1.S1_a_atCD915118--3e-3At3g63000NPL41 (NPL4-LIKE PROTEIN 1)O.I.H.G.S.X.
0.4260.90.98Ta.1770.1.S1_a_atCK209608--6e-1At4g32930unknown proteinO.I.H.G.S.X.
0.3549.80.98Ta.28850.1.S1_atBJ262711--1e-167At3g09840CDC48 (CELL DIVISION CYCLE 48)O.I.H.G.S.X.
0.2939.20.98Ta.7608.1.S1_x_atCD452795--7e-5At2g17200ubiquitin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.697.0GSM138146genotype G13 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.196.4GSM111208genotype F36 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.595.4GSM138161genotype A91 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.495.2GSM111237genotype F38b developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM111215genotype C58 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM138183genotype A10 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM111193genotype F38a developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM111175genotype G30 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM111179genotype DH95 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.692.9GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1613127_at, orthologous to the query gene, Ta.3990.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.91613127_atAt1g67930hypothetical protein LOC100252080-1e-3At5g50260cysteine proteinase, putativeO.I.H.G.S.X.
0.7792.31607889_a_atAt1g67930hypothetical protein LOC100249678-2e-51At2g28760NAD-dependent epimerase/dehydratase family proteinO.I.H.G.S.X.
0.4464.11611797_atAt1g67930hypothetical protein LOC100257001-3e-38At2g30060Ran-binding protein 1b (RanBP1b)O.I.H.G.S.X.
0.3548.51619779_atAt1g67930hypothetical LOC100247281-4e-5At1g57620emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.3243.11618957_atAt1g67930hypothetical protein LOC100263857-6e-27At3g46200aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9)O.I.H.G.S.X.
0.3243.11619079_s_atAt1g67930hypothetical protein LOC100240809-1e-79At5g48230ACAT2 (ACETOACETYL-COA THIOLASE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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