Co-expression analysis

Gene ID Ta.3990.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g67930: Golgi transport complex protein-related (HF=2e-5)
Module size 6 genes
NF 0.49
%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.00.98Ta.3990.1.S1_atBJ262866--2e-5At1g67930Golgi transport complex protein-relatedO.I.H.G.S.X.
0.5979.80.98Ta.13721.2.S1_x_atCA708836--1e+1At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.5072.40.98Ta.21119.1.S1_a_atCD915118--3e-3At3g63000NPL41 (NPL4-LIKE PROTEIN 1)O.I.H.G.S.X.
0.4260.90.98Ta.1770.1.S1_a_atCK209608--6e-1At4g32930unknown proteinO.I.H.G.S.X.
0.3549.80.98Ta.28850.1.S1_atBJ262711--1e-167At3g09840CDC48 (CELL DIVISION CYCLE 48)O.I.H.G.S.X.
0.2939.20.98Ta.7608.1.S1_x_atCD452795--7e-5At2g17200ubiquitin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.697.0GSM138146genotype G13 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.196.4GSM111208genotype F36 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.595.4GSM138161genotype A91 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.495.2GSM111237genotype F38b developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM111215genotype C58 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM138183genotype A10 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM111193genotype F38a developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM111175genotype G30 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM111179genotype DH95 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.692.9GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0378900, orthologous to the query gene, Ta.3990.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.98100.0Os05g0378900At1g67930-Conserved hypothetical protein4e-7At1g67930Golgi transport complex protein-relatedO.I.H.G.S.X.
0.4762.3Os07g0608300At1g67930-Esterase/lipase/thioesterase domain containingprotein1e-2At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.4253.9Os11g0433500At1g67930-Protein transport protein Sec23A (SEC23-relatedprotein A)1e-9At4g14160transport protein, putativeO.I.H.G.S.X.
0.4253.9Os01g0610500At1g67930-Conserved hypothetical protein1e-14At3g05280integral membrane Yip1 family proteinO.I.H.G.S.X.
0.3948.3Os04g0502200At1g67930-Conserved hypothetical protein1e-7At5g11040-O.I.H.G.S.X.
0.3948.3Os01g0708100At1g67930-N-myristoyltransferase 1(N-myristoyltransferase-like protein)7e-14At5g57020NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)O.I.H.G.S.X.
0.3236.3Os03g0112400At1g67930-AP2 adaptor, appendage domain containing protein5e-2At5g22770alpha-ADR (alpha-adaptin)O.I.H.G.S.X.
0.3134.5Os08g0156700At1g67930-VAP272e+0At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3032.7Os07g0496000At1g67930-Nt-rab6 protein9e-68At2g44610RAB6AO.I.H.G.S.X.
0.2931.1Os04g0433900At1g67930-Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2)2e+0At4g16880disease resistance protein-relatedO.I.H.G.S.X.
0.2931.1Os03g0825700At1g67930-Defective in exine formation6e-40At3g09090DEX1 (DEFECTIVE IN EXINE FORMATION 1)O.I.H.G.S.X.
0.2931.1Os01g0600200At1g67930-Ser/Thr specific protein phosphatase 2A Bregulatory subunit beta isoform4e-37At1g17720ATB BETAO.I.H.G.S.X.
0.2931.1Os06g0167100At1g67930-Gamma-adaptin, C-terminal domain containingprotein2e-33At1g60070binding / clathrin binding / protein binding / protein transporterO.I.H.G.S.X.
0.2931.1Os05g0461000At1g67930-Clathrin adaptor complex, small chain familyprotein5e-1At4g08520clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.2831.1Os11g0174000At1g67930-Adaptin, N-terminal domain containing protein2e-89At4g31480coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeO.I.H.G.S.X.
0.2727.5Os11g0181100At1g67930-Nonaspanin (TM9SF) family protein2e-70At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.2625.6Os03g0783700At1g67930-Clathrin assembly small subunit protein AP19(Clathrin assembly protein AP19, small subunit)5e-19At2g17380AP19O.I.H.G.S.X.
0.2625.6Os03g0130500At1g67930-Calcium-binding EF-hand domain containing protein1e-10At1g20760calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2524.1Os03g0227000At1g67930-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.2422.4Os08g0248900At1g67930-ADP-ribosylation factor 32e-46At2g24765ARF3 (ADP-RIBOSYLATION FACTOR 3)O.I.H.G.S.X.
0.2422.4Os01g0511300At1g67930-Proteasome component region PCI domain containingprotein2e-13At4g1900626S proteasome regulatory subunit, putative (RPN9)O.I.H.G.S.X.
0.2321.2Os06g0143900At1g67930-Coatomer protein complex, beta prime6e-99At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.2219.4Os08g0550100At1g67930-Proteasome component region PCI domain containingprotein3e-28At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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