CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3990.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g67930: Golgi transport complex protein-related (HF=2e-5)

Module size 6 genes

NF 0.49

%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.0 0.98 Ta.3990.1.S1_at BJ262866 - - 2e-5 At1g67930 Golgi transport complex protein-related O.I. H.G. S.X.
0.59 79.8 0.98 Ta.13721.2.S1_x_at CA708836 - - 1e+1 At5g42630 ATS (ABERRANT TESTA SHAPE) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.21119.1.S1_a_at CD915118 - - 3e-3 At3g63000 NPL41 (NPL4-LIKE PROTEIN 1) O.I. H.G. S.X.
0.42 60.9 0.98 Ta.1770.1.S1_a_at CK209608 - - 6e-1 At4g32930 unknown protein O.I. H.G. S.X.
0.35 49.8 0.98 Ta.28850.1.S1_at BJ262711 - - 1e-167 At3g09840 CDC48 (CELL DIVISION CYCLE 48) O.I. H.G. S.X.
0.29 39.2 0.98 Ta.7608.1.S1_x_at CD452795 - - 7e-5 At2g17200 ubiquitin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.6 97.0 GSM138146 genotype G13 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.1 96.4 GSM111208 genotype F36 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5 95.4 GSM138161 genotype A91 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4 95.2 GSM111237 genotype F38b developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1 94.5 GSM111215 genotype C58 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1 94.5 GSM138183 genotype A10 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9 94.0 GSM111193 genotype F38a developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8 93.6 GSM111175 genotype G30 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8 93.6 GSM111179 genotype DH95 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6 92.9 GSM138191 genotype D39 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g67930, orthologous to the query gene, Ta.3990.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.73 85.5 At1g67930 843121 Golgi transport complex protein-related F:unknown;P:unknown;C:chloroplast;OMFBPV O.I. H.G. S.X.
0.67 81.6 At3g24350 822024 SYP32 (SYNTAXIN OF PLANTS 32) member of Glycoside Hydrolase Family 17 O.I. H.G. S.X.
0.60 75.7 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB O.I. H.G. S.X.
0.46 59.8 At1g56590 842113 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP O.I. H.G. S.X.
0.40 50.8 At5g57460 835851 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, chloroplast;MPOF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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