Co-expression analysis

Gene ID Ta.3990.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g67930: Golgi transport complex protein-related (HF=2e-5)
Module size 6 genes
NF 0.49
%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.00.98Ta.3990.1.S1_atBJ262866--2e-5At1g67930Golgi transport complex protein-relatedO.I.H.G.S.X.
0.5979.80.98Ta.13721.2.S1_x_atCA708836--1e+1At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.5072.40.98Ta.21119.1.S1_a_atCD915118--3e-3At3g63000NPL41 (NPL4-LIKE PROTEIN 1)O.I.H.G.S.X.
0.4260.90.98Ta.1770.1.S1_a_atCK209608--6e-1At4g32930unknown proteinO.I.H.G.S.X.
0.3549.80.98Ta.28850.1.S1_atBJ262711--1e-167At3g09840CDC48 (CELL DIVISION CYCLE 48)O.I.H.G.S.X.
0.2939.20.98Ta.7608.1.S1_x_atCD452795--7e-5At2g17200ubiquitin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.697.0GSM138146genotype G13 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.196.4GSM111208genotype F36 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.595.4GSM138161genotype A91 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.495.2GSM111237genotype F38b developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM111215genotype C58 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM138183genotype A10 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.994.0GSM111193genotype F38a developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM111175genotype G30 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.893.6GSM111179genotype DH95 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.692.9GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g67930, orthologous to the query gene, Ta.3990.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7385.5At1g67930843121Golgi transport complex protein-relatedF:unknown;P:unknown;C:chloroplast;OMFBPVO.I.H.G.S.X.
0.6781.6At3g24350822024SYP32 (SYNTAXIN OF PLANTS 32)member of Glycoside Hydrolase Family 17O.I.H.G.S.X.
0.6075.7At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.4659.8At1g56590842113clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.4050.8At5g57460835851unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, chloroplast;MPOFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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