Co-expression analysis

Gene ID Ta.3983.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g49670: BAM2 (BARELY ANY MERISTEM 2) (HF=4e-11)
Module size 13 genes
NF 0.17
%ile 30.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.00.96Ta.3983.1.S1_atCK202188--4e-11At3g49670BAM2 (BARELY ANY MERISTEM 2)O.I.H.G.S.X.
0.3448.10.97Ta.3003.1.S1_x_atBE398996--3e-44At5g26751ATSK11O.I.H.G.S.X.
0.2633.60.97Ta.9005.1.S1_s_atBQ162761--4e-6At1g61900unknown proteinO.I.H.G.S.X.
0.2125.50.97TaAffx.12776.1.A1_atBJ235720--4e+0At4g36945phospholipase C/ phosphoric diester hydrolaseO.I.H.G.S.X.
0.2125.50.97TaAffx.132784.1.A1_atBQ235909--1e+0At5g38720unknown proteinO.I.H.G.S.X.
0.2125.50.97Ta.4807.1.S1_atBJ236204--1e+0Atmg00910-O.I.H.G.S.X.
0.1922.40.97Ta.5250.1.S1_s_atCK198169--2e-46At4g14360dehydration-responsive protein-relatedO.I.H.G.S.X.
0.1415.80.97TaAffx.13750.1.S1_s_atCD916252--2e+0At3g04090SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.1314.60.97Ta.9558.1.S1_x_atCD883326--5e-1At5g44568unknown proteinO.I.H.G.S.X.
0.1213.30.97Ta.3285.1.S1_atBQ905252--2e-10At3g55000TON1A (TONNEAU 1)O.I.H.G.S.X.
0.1213.30.97TaAffx.3182.1.S1_s_atCD879896--7e-51At5g18580FASS (FASS 1)O.I.H.G.S.X.
0.1112.40.97Ta.10108.2.A1_x_atCA684446--2e-3At5g43150unknown proteinO.I.H.G.S.X.
0.056.70.97Ta.28851.1.S1_atBJ285745nuclear matrix protein 1-3e+0At5g53670unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.298.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM298056Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM139932Anther mature anthers rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM138193genotype B33 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.094.3GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.793.3GSM111232genotype H8 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.692.9GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.692.9GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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