Co-expression analysis

Gene ID	Ta.3932.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g23510: unknown protein (HF=2e+1)
Module size	8 genes
NF	0.32
%ile	51.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.92	Ta.3932.1.S1_a_at	CA685040	-	-	2e+1	At5g23510	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.92	Ta.8631.2.S1_a_at	CA635564	-	-	5e-9	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.21273.1.S1_s_at	CA615208	-	-	4e-1	At2g42460	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.93	Ta.17648.1.S1_s_at	CA623067	-	-	4e-20	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.22604.1.S1_at	CA688890	-	-	2e-1	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.8488.1.S1_a_at	CA637893	-	-	4e+0	At4g12040	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.5700.2.S1_a_at	BE213377	-	-	2e-3	At3g26690	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.95	Ta.8631.1.S1_at	CA690636	-	-	8e-28	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.9	99.5	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
14.5	99.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
13.5	99.5	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
11.4	99.3	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.0	99.1	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.7	99.1	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.6	98.7	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the grape gene, 1622652_at, orthologous to the query gene, Ta.3932.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1622652_at	At5g23510	-	-	9e-1	At5g53070	ribosomal protein L9 family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	1607039_at	At5g23510	-	-	2e+0	At1g32975	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	1614738_at	At5g23510	-	-	5e-1	At2g29470	ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3)	O.I.	H.G.	S.X.	Please select
0.83	94.6	1610509_at	At5g23510	-	-	5e+0	Atcg00140	-	O.I.	H.G.	S.X.	Please select
0.71	89.5	1619517_at	At5g23510	O-methyltransferase	-	4e-1	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	O.I.	H.G.	S.X.	Please select
0.59	80.6	1607438_at	At5g23510	-	-	6e+0	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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