Co-expression analysis

Gene ID Ta.3922.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g44310: NIT1 (HF=6e+0)
Module size 10 genes
NF 0.42
%ile 66.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5273.70.94Ta.3922.3.S1_x_atCA623436--6e+0At3g44310NIT1O.I.H.G.S.X.
0.7489.40.96TaAffx.16009.1.A1_atBQ801005--2e-2At5g20220zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.6182.00.95Ta.8836.1.A1_atBQ162479--5e+0At5g61490-O.I.H.G.S.X.
0.5273.70.95TaAffx.13218.1.S1_atCA671859--7e+0Atmg01130-O.I.H.G.S.X.
0.5072.40.96Ta.4521.1.S1_atBJ272530--1e-1At2g25270unknown proteinO.I.H.G.S.X.
0.4058.40.95TaAffx.55266.1.S1_s_atCA668997--4e-1At1g35890DNA bindingO.I.H.G.S.X.
0.3448.10.95Ta.8801.1.S1_a_atAJ603270--2e+0At1g61290SYP124 (SYNTAXIN OF PLANTS 124)O.I.H.G.S.X.
0.3448.10.95TaAffx.83625.1.A1_atCD490338--5e+0At2g13510unknown proteinO.I.H.G.S.X.
0.2839.20.96Ta.5622.1.A1_atBJ286372--1e+0At5g22510beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeO.I.H.G.S.X.
0.2430.30.95Ta.3329.1.S1_atBJ210428--8e-1At4g23410TET5 (TETRASPANIN5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.6GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
9.699.1GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.298.5GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
7.298.5GSM139932Anther mature anthers rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.198.1GSM139933Anther mature anthers rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.098.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.097.4GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.396.7GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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