Co-expression analysis

Gene ID	Ta.3922.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g44310: NIT1 (HF=6e+0)
Module size	6 genes
NF	0.39
%ile	62.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.94	Ta.3922.3.S1_at	CA623436	-	-	6e+0	At3g44310	NIT1	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	Ta.23457.1.S1_at	CK209175	-	-	5e-1	At1g70640	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.30561.1.A1_at	CK205764	-	-	1e+0	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.7621.1.S1_at	BJ268570	-	-	1e+0	At4g27370	VIIIB	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.12137.1.A1_at	BQ171664	-	-	9e-3	At4g13770	CYP83A1 (CYTOCHROME P450 83A1)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.95	TaAffx.110420.1.S1_s_at	CA659123	-	-	7e-2	At4g23890	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	98.0	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.4	97.7	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.1	96.4	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6	95.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.2	94.8	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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