Co-expression analysis

Gene ID Ta.3911.2.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At2g44290: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) (HF=4e+0)
Module size 20 genes
NF 0.61
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6684.10.95Ta.3911.2.S1_s_atCA604151--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.7589.80.95TaAffx.115939.2.S1_atCA677586--7e-2At1g30800-O.I.H.G.S.X.
0.7489.40.95Ta.18019.2.S1_atCA625748--1e+0At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.7188.00.95TaAffx.85817.1.S1_atCA619362--4e+0At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.7188.00.95Ta.6762.3.S1_atBJ246546--1e+0At5g61490-O.I.H.G.S.X.
0.6886.50.95TaAffx.5596.1.S1_atCA705635--3e+0At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.6583.90.96TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.6383.10.95TaAffx.79437.1.S1_atCA715704--3e+0At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.6282.30.95TaAffx.85941.1.S1_atCA618291--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.6182.00.95TaAffx.109175.2.S1_x_atCA679138--1e+0At4g29020glycine-rich proteinO.I.H.G.S.X.
0.6182.00.95TaAffx.132656.2.S1_atCA600729--1e+0At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)O.I.H.G.S.X.
0.5779.20.95Ta.16201.1.S1_atCA602442--3e+0At5g57535unknown proteinO.I.H.G.S.X.
0.5779.20.95TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.5779.20.95TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5678.60.95TaAffx.51594.1.S1_atCA723204--1e+0At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)O.I.H.G.S.X.
0.5576.80.95TaAffx.4857.1.S1_atCA730111--4e+0At1g77682-O.I.H.G.S.X.
0.4969.70.95Ta.21581.1.S1_atCA696527--4e+0At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.4969.70.95TaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.4260.90.96TaAffx.112158.1.S1_atCA626538--2e+1At3g28590unknown proteinO.I.H.G.S.X.
0.4159.60.96TaAffx.78861.1.S1_atCA725589--1e+1At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.898.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.398.6GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.598.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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