Co-expression analysis

Gene ID Ta.3840.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g21170: 5'-AMP-activated protein kinase beta-2 subunit, putative (HF=4e-5)
Module size 6 genes
NF 0.51
%ile 77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3854.70.88Ta.3840.1.S1_atCD919677--4e-5At5g211705'-AMP-activated protein kinase beta-2 subunit, putativeO.I.H.G.S.X.
0.6081.00.94Ta.28185.2.S1_x_atCD869435--6e-1At3g46900COPT2O.I.H.G.S.X.
0.5374.90.91Ta.19456.1.A1_s_atCD865926--3e-1At2g20875EPF1 (EPIDERMAL PATTERNING FACTOR 1)O.I.H.G.S.X.
0.5072.40.90Ta.20706.2.S1_atCA603430--2e-2At3g50550unknown proteinO.I.H.G.S.X.
0.4464.50.94TaAffx.20065.1.S1_atCK207580--2e-1At3g45970ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)O.I.H.G.S.X.
0.4058.40.94Ta.28185.1.S1_atAL820475--2e-4At3g46900COPT2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.599.2GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.899.1GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.999.0GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
8.498.9GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.298.1GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.098.0GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.296.6GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.196.4GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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