Co-expression analysis

Gene ID Ta.3836.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g24460: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=2e+0)
Module size 6 genes
NF 0.08
%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.90.95Ta.3836.1.S1_atBJ254410--2e+0At3g24460TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.1618.20.96TaAffx.58795.1.S1_atCA615520--7e-2At3g51710curculin-like (mannose-binding) lectin family protein / PAN domain-containing proteinO.I.H.G.S.X.
0.1517.10.96Ta.10211.2.S1_atBJ243761--3e-1At5g15830AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)O.I.H.G.S.X.
0.1517.10.95Ta.26066.1.S1_atCD452401--7e-13At3g21110PUR7 (PURIN 7)O.I.H.G.S.X.
0.056.70.95Ta.16828.1.S1_atCA613427--9e-1At1g19610PDF1.4O.I.H.G.S.X.
0.045.80.96Ta.13282.1.S1_atCD373866--5e-8At1g48650helicase domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.899.8GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
15.699.6GSM250902Tc_7dpi_inoculated_rep1GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
12.499.4GSM250908Tc_7dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.698.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.697.8GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.897.2GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.096.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0297700, orthologous to the query gene, Ta.3836.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8896.8Os06g0297700At3g24460-Conserved hypothetical protein4e+0At5g50430UBC33 (ubiquitin-conjugating enzyme 33)O.I.H.G.S.X.
0.3032.7Os03g0193000At3g24460-Scarecrow-like 5 (Fragment)3e-4At5g48150PAT1 (phytochrome a signal transduction 1)O.I.H.G.S.X.
0.2931.1Os03g0839000At3g24460-Zn-finger, RING domain containing protein5e-1At1g72175zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2524.1Os04g0653200At3g24460-Low affinity calcium transporter CAX2 (Fragment)1e-6At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.1510.3Os01g0867900At3g24460--2e-19At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.149.3Os09g0372800At3g24460-Protein kinase domain containing protein3e-9At5g08160ATPK3O.I.H.G.S.X.
0.127.2Os08g0110500At3g24460-Arm repeat containing protein3e-5At2g23140binding / ubiquitin-protein ligaseO.I.H.G.S.X.
0.105.7Os01g0621700At3g24460-Myosin tail 2 domain containing protein4e-1At3g45220serpin, putative / serine protease inhibitor, putativeO.I.H.G.S.X.
0.094.9Os07g0164300At3g24460-Syntaxin, N-terminal domain containing protein1e-11At5g08080SYP132 (SYNTAXIN OF PLANTS 132)O.I.H.G.S.X.
0.094.9Os02g0597900At3g24460-B-keto acyl reductase7e-3At1g24470short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.073.7Os04g0606400At3g24460-Mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC3.2.1.113)4e-22At3g21160mannosyl-oligosaccharide 1,2-alpha-mannosidase, putativeO.I.H.G.S.X.
0.042.0Os04g0600800At3g24460-Conserved hypothetical protein1e-25At4g27630GTG2 (GPCR-TYPE G PROTEIN 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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