CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3836.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g24460: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=2e+0)

Module size 6 genes

NF 0.08

%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 74.9 0.95 Ta.3836.1.S1_at BJ254410 - - 2e+0 At3g24460 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.16 18.2 0.96 TaAffx.58795.1.S1_at CA615520 - - 7e-2 At3g51710 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein O.I. H.G. S.X.
0.15 17.1 0.96 Ta.10211.2.S1_at BJ243761 - - 3e-1 At5g15830 AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3) O.I. H.G. S.X.
0.15 17.1 0.95 Ta.26066.1.S1_at CD452401 - - 7e-13 At3g21110 PUR7 (PURIN 7) O.I. H.G. S.X.
0.05 6.7 0.95 Ta.16828.1.S1_at CA613427 - - 9e-1 At1g19610 PDF1.4 O.I. H.G. S.X.
0.04 5.8 0.96 Ta.13282.1.S1_at CD373866 - - 5e-8 At1g48650 helicase domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.8 99.8 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
15.6 99.6 GSM250902 Tc_7dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.4 99.4 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8 97.9 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
5.6 97.8 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
5.4 97.7 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
4.8 97.2 GSM139931 Anther maturea nthers rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0 96.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the rice gene, Os06g0297700, orthologous to the query gene, Ta.3836.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 Os06g0297700 At3g24460 - Conserved hypothetical protein 4e+0 At5g50430 UBC33 (ubiquitin-conjugating enzyme 33) O.I. H.G. S.X.
0.30 32.7 Os03g0193000 At3g24460 - Scarecrow-like 5 (Fragment) 3e-4 At5g48150 PAT1 (phytochrome a signal transduction 1) O.I. H.G. S.X.
0.29 31.1 Os03g0839000 At3g24460 - Zn-finger, RING domain containing protein 5e-1 At1g72175 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.25 24.1 Os04g0653200 At3g24460 - Low affinity calcium transporter CAX2 (Fragment) 1e-6 At3g13320 CAX2 (CATION EXCHANGER 2) O.I. H.G. S.X.
0.15 10.3 Os01g0867900 At3g24460 - - 2e-19 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.
0.14 9.3 Os09g0372800 At3g24460 - Protein kinase domain containing protein 3e-9 At5g08160 ATPK3 O.I. H.G. S.X.
0.12 7.2 Os08g0110500 At3g24460 - Arm repeat containing protein 3e-5 At2g23140 binding / ubiquitin-protein ligase O.I. H.G. S.X.
0.10 5.7 Os01g0621700 At3g24460 - Myosin tail 2 domain containing protein 4e-1 At3g45220 serpin, putative / serine protease inhibitor, putative O.I. H.G. S.X.
0.09 4.9 Os07g0164300 At3g24460 - Syntaxin, N-terminal domain containing protein 1e-11 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) O.I. H.G. S.X.
0.09 4.9 Os02g0597900 At3g24460 - B-keto acyl reductase 7e-3 At1g24470 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.07 3.7 Os04g0606400 At3g24460 - Mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC3.2.1.113) 4e-22 At3g21160 mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative O.I. H.G. S.X.
0.04 2.0 Os04g0600800 At3g24460 - Conserved hypothetical protein 1e-25 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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