Co-expression analysis

Gene ID Ta.3836.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g24460: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=2e+0)
Module size 6 genes
NF 0.08
%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.90.95Ta.3836.1.S1_atBJ254410--2e+0At3g24460TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.1618.20.96TaAffx.58795.1.S1_atCA615520--7e-2At3g51710curculin-like (mannose-binding) lectin family protein / PAN domain-containing proteinO.I.H.G.S.X.
0.1517.10.96Ta.10211.2.S1_atBJ243761--3e-1At5g15830AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)O.I.H.G.S.X.
0.1517.10.95Ta.26066.1.S1_atCD452401--7e-13At3g21110PUR7 (PURIN 7)O.I.H.G.S.X.
0.056.70.95Ta.16828.1.S1_atCA613427--9e-1At1g19610PDF1.4O.I.H.G.S.X.
0.045.80.96Ta.13282.1.S1_atCD373866--5e-8At1g48650helicase domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.899.8GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
15.699.6GSM250902Tc_7dpi_inoculated_rep1GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
12.499.4GSM250908Tc_7dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.698.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.697.8GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.897.2GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.096.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, EBma04_SQ004_K04_at, orthologous to the query gene, Ta.3836.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1EBma04_SQ004_K04_atAt3g24460--3e+0At3g03320-O.I.H.G.S.X.
0.5066.9Contig8741_atAt3g24460--3e+0At3g62070unknown proteinO.I.H.G.S.X.
0.3342.6Contig17620_atAt3g24460--4e+0At4g12580unknown proteinO.I.H.G.S.X.
0.097.4Contig1907_s_atAt3g24460--6e-4At4g12780heat shock protein bindingO.I.H.G.S.X.
0.043.4Contig12767_atAt3g24460--2e+0At4g24660ATHB22 (HOMEOBOX PROTEIN 22)O.I.H.G.S.X.
0.011.1Contig6631_atAt3g24460--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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