CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3834.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g69650: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (HF=3e-1)

Module size 6 genes

NF 0.55

%ile 81.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.1 0.95 Ta.3834.1.A1_at BJ254393 - - 3e-1 At1g69650 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.67 86.3 0.97 Ta.13084.1.S1_at CA744806 - - 3e-1 At3g13437 unknown protein O.I. H.G. S.X.
0.60 81.0 0.96 Ta.11963.1.A1_at BQ171171 - - 4e+0 At5g60200 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.50 72.4 0.96 Ta.7890.2.A1_a_at BQ160858 - - 4e+0 At5g51451 unknown protein O.I. H.G. S.X.
0.40 58.4 0.97 TaAffx.5779.1.S1_at BJ307256 - - 1e-1 At1g35365 unknown protein O.I. H.G. S.X.
0.32 44.4 0.96 Ta.13084.2.S1_at BG904606 - - 3e+0 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.1 98.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7 93.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.7 93.3 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4 92.0 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.2 91.0 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os04g0492800, orthologous to the query gene, Ta.3834.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 Os04g0492800 At1g69650 - Calmodulin (CaM) 3e-1 At3g07490 AGD11 (ARF-GAP domain 11) O.I. H.G. S.X.
0.53 71.3 Os06g0691400 At1g69650 - IAA-amino acid conjugate hydrolase-like protein(Fragment) 3e-4 At1g44350 ILL6 O.I. H.G. S.X.
0.38 46.9 Os06g0600400 At1g69650 - Cytochrome P450 family protein 3e-1 At3g55790 unknown protein O.I. H.G. S.X.
0.12 7.2 Os03g0849800 At1g69650 - Conserved hypothetical protein 6e-2 At2g02061 unknown protein O.I. H.G. S.X.
0.12 7.2 Os05g0554400 At1g69650 - Phosphatidyl serine synthase family protein 1e-12 At1g15110 phosphatidyl serine synthase family protein O.I. H.G. S.X.
0.02 1.0 Os08g0510700 At1g69650 - Myb, DNA-binding domain containing protein 5e-3 At4g16240 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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