Co-expression analysis

Gene ID	Ta.3559.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g02600: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) (HF=5e-12)
Module size	11 genes
NF	0.36
%ile	58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.97	Ta.3559.2.S1_a_at	CA697904	-	-	5e-12	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.96	TaAffx.99201.1.S1_at	CA685457	-	-	5e-8	At4g18230	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.23742.2.S1_a_at	BJ233343	-	-	1e-55	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.7295.3.S1_a_at	CA611407	-	-	4e-3	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.6777.2.A1_x_at	CD885593	-	-	2e-20	At5g51150	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.906.3.S1_at	CA604628	-	-	6e-3	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.7299.2.S1_a_at	CA605243	-	-	5e-12	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.5057.1.S1_x_at	X89826.1	profilin	-	2e-8	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	TaAffx.80488.2.S1_s_at	CA642333	-	-	1e+0	At1g54870	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	TaAffx.128478.2.S1_s_at	CA610609	-	-	8e-11	At5g32470	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.28571.1.S1_s_at	CA639817	-	-	8e-5	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.8	96.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.8	96.0	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7	95.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM111217	genotype D15 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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