Co-expression analysis

Gene ID	Ta.3559.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g15080: LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) (HF=3e-9)
Module size	11 genes
NF	0.31
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	0.97	Ta.3559.1.S1_at	BE213357	-	-	3e-9	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.9300.1.S1_at	BJ238999	-	-	5e-1	At3g08770	LTP6	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.7540.2.S1_at	BJ320845	-	-	4e-6	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.25681.1.S1_at	AJ614892	-	-	3e-2	At2g22145	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	TaAffx.113600.1.S1_s_at	CA608828	-	-	6e+0	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.7296.1.S1_at	BJ252648	-	-	4e-5	At3g45000	VPS24.2	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.7286.3.S1_a_at	CA646766	-	-	1e-9	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.23742.1.S1_at	CA668797	-	-	5e-66	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.98	Ta.8152.1.S1_at	CD871046	-	-	4e-22	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.22913.1.S1_at	CA715053	-	-	1e+1	At5g61200	-	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	Ta.1602.1.S1_x_at	CA721317	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.4	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
11.5	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.9	99.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.6	98.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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