CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3543.1.A1_at

Gene name
Homology with Arabidopsis Similar to At2g17785: zinc-binding protein-related (HF=3e-1)

Module size 6 genes

NF 0.56

%ile 82.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.97 Ta.3543.1.A1_at BJ220370 - - 3e-1 At2g17785 zinc-binding protein-related O.I. H.G. S.X.
0.50 72.4 0.96 Ta.27940.1.A1_s_at BQ169626 - - 1e+0 At1g01380 ETC1 (ENHANCER OF TRY AND CPC 1) O.I. H.G. S.X.
0.44 64.5 0.97 TaAffx.12303.1.S1_at CD938363 - - 1e-1 At4g37240 unknown protein O.I. H.G. S.X.
0.44 64.5 0.97 Ta.6587.2.S1_x_at CF133308 - - 3e-1 At2g40100 LHCB4.3 (light harvesting complex PSII) O.I. H.G. S.X.
0.43 62.2 0.97 Ta.6587.2.S1_a_at CF133308 - - 3e-1 At2g40100 LHCB4.3 (light harvesting complex PSII) O.I. H.G. S.X.
0.40 58.4 0.97 TaAffx.13383.1.A1_at BG904557 - - 8e-1 At1g17800 plastocyanin-like domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.7 99.9 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
21.3 99.7 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
15.1 99.6 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7 95.8 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8 93.6 GSM138166 genotype G30 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6 92.9 GSM138180 genotype A35 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6 92.9 GSM143523 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5 92.5 GSM250883 Tc_3dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5 92.5 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.3 91.5 GSM250886 TcLr1_3dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the grape gene, 1617411_at, orthologous to the query gene, Ta.3543.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 66.5 1617411_at At2g17785 hypothetical protein LOC100244514 - 2e-2 At5g57150 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.36 50.7 1622308_at At2g17785 hypothetical protein LOC100263876 - 4e+0 At4g18425 unknown protein O.I. H.G. S.X.
0.35 48.5 1606943_at At2g17785 hypothetical protein LOC100245618 - 2e+0 At2g46100 unknown protein O.I. H.G. S.X.
0.30 39.4 1611834_at At2g17785 hypothetical protein LOC100247349 - 3e-4 At2g18190 AAA-type ATPase family protein O.I. H.G. S.X.
0.29 37.7 1618090_at At2g17785 - - 2e+0 At4g32330 - O.I. H.G. S.X.
0.25 30.5 1617358_s_at At2g17785 hypothetical protein LOC100246286 /// hypothetical LOC100254879 /// hypothetical protein LOC100258299 /// hypothetical protein LOC100258874 /// hypothetical protein LOC100264041 /// hypothetical protein LOC100265184 - 2e+0 At2g45650 AGL6 (AGAMOUS-LIKE 6) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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