Co-expression analysis

Gene ID	Ta.3543.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g17785: zinc-binding protein-related (HF=3e-1)
Module size	6 genes
NF	0.56
%ile	82.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.97	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.27940.1.A1_s_at	BQ169626	-	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	TaAffx.12303.1.S1_at	CD938363	-	-	1e-1	At4g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.6587.2.S1_x_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.6587.2.S1_a_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	TaAffx.13383.1.A1_at	BG904557	-	-	8e-1	At1g17800	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.7	99.9	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
21.3	99.7	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
15.1	99.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM138166	genotype G30 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM138180	genotype A35 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM250883	Tc_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.3	91.5	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.45821.1.A1_at, orthologous to the query gene, Ta.3543.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	PtpAffx.45821.1.A1_at	At2g17785	tubulin, beta chain	-	7e-4	At1g75780	TUB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.2070.1.S1_at	At2g17785	hypothetical protein	-	1e+0	At3g27350	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.206087.1.S1_at	At2g17785	hypothetical protein	-	5e-83	At3g10200	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.7924.1.S1_at	At2g17785	hypothetical protein	-	8e-6	At5g62930	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.201972.1.S1_at	At2g17785	hypothetical protein	-	5e-14	At3g28670	oxidoreductase/ zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.6483.1.A1_s_at	At2g17785	hypothetical protein	-	2e-2	At1g69980	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.21786.1.S1_at	At2g17785	hypothetical protein	-	3e-27	At5g66410	PLP3b (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.2280.1.A1_s_at	At2g17785	hypothetical protein	-	1e-4	At3g45600	TET3 (TETRASPANIN3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.4696.1.S1_s_at	At2g17785	hypothetical protein	-	4e-11	At3g63460	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.41339.1.S1_at	At2g17785	hypothetical protein	-	3e-11	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.2238.1.S1_s_at	At2g17785	f-box family protein	-	3e-10	At2g18280	AtTLP2 (TUBBY LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.52853.1.A1_at	At2g17785	hypothetical protein	-	6e+0	At2g45820	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.88808.1.A1_at	At2g17785	-	-	5e+0	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.47887.1.A1_at	At2g17785	hypothetical protein	-	1e+0	At1g50290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.134187.6.A1_at	At2g17785	-	-	1e+0	At1g12680	PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.61197.1.A1_at	At2g17785	hypothetical protein	-	2e-12	At2g20560	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.148436.1.S1_at	At2g17785	hypothetical protein	-	3e-62	At1g51540	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.5277.2.A1_a_at	At2g17785	hypothetical protein	-	2e-21	At1g16900	sugar binding / transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.160485.2.A1_a_at	At2g17785	hypothetical protein	-	2e+0	At1g08160	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.31559.1.A1_at	At2g17785	pseudo response regulator	-	4e-2	At2g44440	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.10330.1.A1_at	At2g17785	hypothetical protein	-	2e-9	At4g00585	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.10956.2.S1_at	At2g17785	hypothetical protein	-	4e-4	At1g04910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.793.2.S1_a_at	At2g17785	hypothetical protein	-	5e-1	At2g20400	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.74227.1.A1_at	At2g17785	hypothetical protein	-	2e+0	At2g04420	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	Ptp.5534.1.A1_s_at	At2g17785	hypothetical protein	-	2e-80	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	Ptp.2388.1.A1_s_at	At2g17785	hypothetical protein	-	2e-6	At4g26410	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	Ptp.665.1.S1_at	At2g17785	hypothetical protein	-	2e-1	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.207723.1.S1_s_at	At2g17785	hypothetical protein	-	8e-76	At2g39750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.20386.1.A1_at	At2g17785	hypothetical protein	-	2e-29	At2g39750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.9143.1.A1_at	At2g17785	hypothetical protein	-	2e-1	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.2450.1.S1_at	At2g17785	hypothetical protein	-	9e-111	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.9947.1.A1_at	At2g17785	hypothetical protein	-	1e-35	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.11374.1.S1_s_at	At2g17785	-	-	1e-4	At2g46170	reticulon family protein (RTNLB5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.66672.1.S1_at	At2g17785	hypothetical protein	-	2e-6	At2g40935	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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