Co-expression analysis

Gene ID	Ta.3543.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g17785: zinc-binding protein-related (HF=3e-1)
Module size	6 genes
NF	0.56
%ile	82.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.97	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.27940.1.A1_s_at	BQ169626	-	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	TaAffx.12303.1.S1_at	CD938363	-	-	1e-1	At4g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.6587.2.S1_x_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.6587.2.S1_a_at	CF133308	-	-	3e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	TaAffx.13383.1.A1_at	BG904557	-	-	8e-1	At1g17800	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.7	99.9	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
21.3	99.7	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
15.1	99.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM138166	genotype G30 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM138180	genotype A35 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM250883	Tc_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.3	91.5	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig5423_at, orthologous to the query gene, Ta.3543.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	Contig5423_at	At2g17785	-	-	6e-1	At1g09370	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig6890_at	At2g17785	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig6860_at	At2g17785	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig1302_at	At2g17785	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig3332_at	At2g17785	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig7217_x_at	At2g17785	-	-	4e-1	Atcg01020	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig12140_at	At2g17785	-	-	4e+0	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig20398_at	At2g17785	-	-	8e-3	At2g42620	MAX2 (MORE AXILLARY BRANCHES 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig23613_at	At2g17785	-	-	2e-12	At3g54030	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	rbaak4i15_s_at	At2g17785	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig12594_at	At2g17785	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig416_x_at	At2g17785	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig8310_at	At2g17785	-	-	2e-5	At5g16510	reversibly glycosylated polypeptide, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig6964_s_at	At2g17785	-	-	9e-1	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig10647_at	At2g17785	-	-	2e-46	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	HA06i14r_s_at	At2g17785	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig8565_at	At2g17785	-	-	7e-10	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig9632_at	At2g17785	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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