CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3507.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At4g29590: methyltransferase (HF=1e+0)

Module size 8 genes

NF 0.43

%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.93 Ta.3507.2.S1_a_at BJ265270 - - 1e+0 At4g29590 methyltransferase O.I. H.G. S.X.
0.67 86.3 0.90 Ta.3507.1.S1_at BQ172406 - - 1e-1 At1g73280 scpl3 (serine carboxypeptidase-like 3) O.I. H.G. S.X.
0.67 86.3 0.92 TaAffx.122846.1.S1_at BJ259558 - - 7e-2 At5g37580 - O.I. H.G. S.X.
0.67 86.3 0.94 TaAffx.122846.2.S1_s_at CA616137 - - 6e-2 At5g37580 - O.I. H.G. S.X.
0.50 72.4 0.92 TaAffx.122846.3.S1_s_at CA646635 - - 1e+0 At4g29590 methyltransferase O.I. H.G. S.X.
0.31 42.7 0.94 Ta.6899.1.S1_at CK210172 - - 2e-2 At3g48530 KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) O.I. H.G. S.X.
0.27 35.6 0.93 Ta.6899.3.S1_at CA605128 - - 4e+0 At5g18180 Gar1 RNA-binding region family protein O.I. H.G. S.X.
0.11 12.4 0.93 Ta.25573.1.S1_at BT009499.1 - - 1e-1 At5g10870 ATCM2 (chorismate mutase 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.1 99.8 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
16.9 99.6 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
14.9 99.5 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
14.8 99.5 GSM314274 tissue type: floral bracts, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
8.4 98.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
7.6 98.7 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
5.8 97.9 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
5.4 97.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
5.0 97.4 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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