Co-expression analysis

Gene ID Ta.3504.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=3e-4)
Module size 7 genes
NF 0.02
%ile 7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9298.50.79Ta.3504.2.A1_atCA683846--3e-4At3g16150L-asparaginase, putative / L-asparagine amidohydrolase, putativeO.I.H.G.S.X.
0.1719.80.88TaAffx.119928.1.A1_s_atBJ251441--4e-2At1g14900HMGA (HIGH MOBILITY GROUP A)O.I.H.G.S.X.
0.078.60.87Ta.27414.1.S1_atBQ801561--1e+1At5g26890unknown proteinO.I.H.G.S.X.
0.078.60.86Ta.10408.1.S1_atCN009026--2e-10At1g10470ARR4 (RESPONSE REGULATOR 4)O.I.H.G.S.X.
0.023.60.89Ta.6012.1.S1_a_atBJ266501--3e+0At5g16640pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.012.40.88Ta.27457.1.S1_x_atCD894008--2e-9At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.012.40.87Ta.2407.2.A1_atCA623177--3e-2At1g76080CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.298.5GSM246397SB57_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stemLink to GEO
6.498.2GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.697.0GSM143509Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.496.8GSM143504Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.996.1GSM314267tissue type: seedling, leaf - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.795.8GSM246386SB169_Stem_ rep1_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stemLink to GEO
3.795.8GSM143516Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1622880_at, orthologous to the query gene, Ta.3504.2.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8695.11622880_atAt3g16150--2e-1At3g15020malate dehydrogenase (NAD), mitochondrial, putativeO.I.H.G.S.X.
0.6384.31610729_atAt3g16150hypothetical protein LOC100257029-3e+0At5g44020acid phosphatase class B family proteinO.I.H.G.S.X.
0.4868.81616710_atAt3g16150hypothetical protein LOC100248331-2e-8At3g56370leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3243.11619190_atAt3g16150hypothetical protein LOC100254635-1e-7At5g24760alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.2837.71607578_atAt3g16150hypothetical protein LOC100247175-1e+0At5g57000unknown proteinO.I.H.G.S.X.
0.2837.71608211_atAt3g16150hypothetical protein LOC100247578-6e+0At3g55490-O.I.H.G.S.X.
0.2632.01611440_atAt3g16150hypothetical protein LOC100257657-1e-8At1g49840unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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