Co-expression analysis

Gene ID	Ta.3504.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=3e-4)
Module size	7 genes
NF	0.02
%ile	7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.79	Ta.3504.2.A1_at	CA683846	-	-	3e-4	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.88	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.87	Ta.27414.1.S1_at	BQ801561	-	-	1e+1	At5g26890	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.86	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.89	Ta.6012.1.S1_a_at	BJ266501	-	-	3e+0	At5g16640	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.88	Ta.27457.1.S1_x_at	CD894008	-	-	2e-9	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.87	Ta.2407.2.A1_at	CA623177	-	-	3e-2	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM246397	SB57_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
6.4	98.2	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6	97.0	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4	96.8	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM246386	SB169_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.7	95.8	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the barley gene, Contig8740_at, orthologous to the query gene, Ta.3504.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	Contig8740_at	At3g16150	-	-	8e-3	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig13312_at	At3g16150	-	-	5e+0	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig16853_at	At3g16150	-	-	6e-4	At2g02370	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig10600_s_at	At3g16150	-	-	3e+0	At3g19220	SCO2 (SNOWY COTYLEDON 2)	O.I.	H.G.	S.X.	Please select
0.54	70.3	rbaal35o24_at	At3g16150	-	-	1e+0	At4g04360	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	70.3	HV05A09u_s_at	At3g16150	-	-	3e+0	At4g09250	-	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig2784_at	At3g16150	-	-	2e-13	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig9756_at	At3g16150	-	-	2e-47	At3g62220	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig3877_s_at	At3g16150	-	-	1e-4	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	rbaal38l09_s_at	At3g16150	-	-	1e+0	At5g50423	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	rbaal1f12_s_at	At3g16150	-	-	4e-2	At1g58320	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig873_s_at	At3g16150	-	-	2e-121	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig903_at	At3g16150	-	-	5e-11	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig21992_at	At3g16150	-	-	1e+0	At3g56130	biotin/lipoyl attachment domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig11729_at	At3g16150	-	-	2e-4	At3g12640	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig8625_at	At3g16150	-	-	2e-1	At3g04880	DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig9864_at	At3g16150	-	-	4e-8	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig22689_at	At3g16150	-	-	2e+0	At4g33730	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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