CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3504.2.A1_at

Gene name
Homology with Arabidopsis Similar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=3e-4)

Module size 7 genes

NF 0.02

%ile 7.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 98.5 0.79 Ta.3504.2.A1_at CA683846 - - 3e-4 At3g16150 L-asparaginase, putative / L-asparagine amidohydrolase, putative O.I. H.G. S.X.
0.17 19.8 0.88 TaAffx.119928.1.A1_s_at BJ251441 - - 4e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) O.I. H.G. S.X.
0.07 8.6 0.87 Ta.27414.1.S1_at BQ801561 - - 1e+1 At5g26890 unknown protein O.I. H.G. S.X.
0.07 8.6 0.86 Ta.10408.1.S1_at CN009026 - - 2e-10 At1g10470 ARR4 (RESPONSE REGULATOR 4) O.I. H.G. S.X.
0.02 3.6 0.89 Ta.6012.1.S1_a_at BJ266501 - - 3e+0 At5g16640 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.01 2.4 0.88 Ta.27457.1.S1_x_at CD894008 - - 2e-9 At3g09390 MT2A (METALLOTHIONEIN 2A) O.I. H.G. S.X.
0.01 2.4 0.87 Ta.2407.2.A1_at CA623177 - - 3e-2 At1g76080 CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.3 99.2 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
7.2 98.5 GSM246397 SB57_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
6.4 98.2 GSM143502 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6 97.0 GSM143509 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4 96.8 GSM143504 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9 96.1 GSM314267 tissue type: seedling, leaf - rep2 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7 95.8 GSM246386 SB169_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
3.7 95.8 GSM143516 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g16150, orthologous to the query gene, Ta.3504.2.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At3g16150 820860 L-asparaginase, putative / L-asparagine amidohydrolase, putative F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA O.I. H.G. S.X.
0.57 73.8 At5g16980 831561 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress, response to cyclopentenone;C:unknown;BOFMPA O.I. H.G. S.X.
0.33 38.1 At2g04040 814938 TX1 AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+. O.I. H.G. S.X.
0.09 2.8 At2g16450 816143 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.09 2.8 At5g49690 835032 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOVF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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