Co-expression analysis

Gene ID	Ta.3496.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g31250: proline-rich family protein (HF=3e-1)
Module size	6 genes
NF	0.38
%ile	61.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.97	Ta.3496.2.S1_a_at	CA630377	-	-	3e-1	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	Ta.6968.2.S1_a_at	CA604796	-	-	2e-33	At5g03520	ATRAB8C	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	Ta.18528.2.S1_a_at	CA596497	-	-	4e-37	At2g32980	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.6867.3.A1_a_at	BJ228637	-	-	1e+0	At1g17147	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.3478.2.S1_a_at	CA648423	-	-	9e-20	At1g26830	ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.97	Ta.9991.1.A1_at	CA637688	-	-	2e-1	At1g49990	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage