Co-expression analysis

Gene ID	Ta.3463.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g36410: UBC17 (UBIQUITIN-CONJUGATING ENZYME 17) (HF=2e-5)
Module size	23 genes
NF	0.33
%ile	54.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.3	0.92	Ta.3463.3.S1_x_at	CA681836	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	Ta.11338.3.S1_x_at	CA647367	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.96	Ta.7861.2.S1_a_at	CA692192	-	-	9e-1	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.3463.3.S1_a_at	CA681836	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.7861.2.S1_x_at	CA692192	-	-	9e-1	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.14532.1.S1_at	CD900916	-	-	4e-45	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	Ta.2305.3.S1_a_at	CA603527	-	-	4e+0	At5g59305	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.3335.1.S1_at	CD890295	-	-	2e+0	At3g53520	UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.18508.1.S1_a_at	CA652261	-	-	4e-1	At4g37470	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.28498.1.S1_at	CK154432	-	-	3e+0	At5g64330	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	TaAffx.49165.1.S1_x_at	CA640875	-	-	2e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.3463.1.S1_x_at	BQ753035	-	-	4e-20	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	Ta.7832.1.S1_at	CA646083	-	-	9e-2	At2g04900	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.9297.1.S1_at	BJ321859	-	-	2e+0	At2g07669	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.96	Ta.13695.1.S1_at	BQ801473	-	-	1e-25	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.6673.1.A1_a_at	BJ319533	-	-	2e-9	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.8613.1.A1_at	BQ162128	-	-	1e+0	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.8023.1.S1_at	CA640979	-	-	4e-3	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.2361.1.S1_at	CK198765	-	-	2e-36	At3g45180	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.4059.2.S1_s_at	CA701531	-	-	4e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.2305.2.S1_a_at	CD909723	-	-	5e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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