Co-expression analysis

Gene ID	Ta.3382.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g21460: electron carrier/ protein disulfide oxidoreductase (HF=4e+0)
Module size	6 genes
NF	0.92
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.95	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	Ta.23822.1.S1_at	AF123603.1	-	-	6e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Ta.3380.1.S1_at	AB042629.1	-	-	2e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Ta.23042.1.S1_x_at	BE517350	-	-	1e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.0	99.8	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
22.6	99.8	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
19.7	99.7	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
15.4	99.6	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
12.4	99.4	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.90.1.A1_a_at, orthologous to the query gene, Ta.3382.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	90.3	Zm.90.1.A1_a_at	At3g21460	-	-	4e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.5373.1.S1_at	At3g21460	hypothetical protein LOC100276438	-	1e+0	At5g26170	WRKY50	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.2753.1.A1_at	At3g21460	ER lumen protein retaining receptor	-	4e-2	At3g25040	ER lumen protein retaining receptor, putative / HDEL receptor, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.6148.3.S1_a_at	At3g21460	26S proteasome non-ATPase regulatory subunit 13 /// 26S proteasome non-ATPase regulatory subunit 13	-	1e-1	At4g19006	26S proteasome regulatory subunit, putative (RPN9)	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.17633.1.A1_at	At3g21460	tropinone reductase 2	-	7e+0	At2g15830	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.17817.1.A1_at	At3g21460	zinc finger C-x8-C-x5-C-x3-H type family protein	-	1e-8	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.16508.1.S1_at	At3g21460	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.3973.1.A1_at	At3g21460	hypothetical protein LOC100192727	-	7e-17	At1g16040	-	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.2520.1.A1_at	At3g21460	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.9582.1.A1_at	At3g21460	-	-	2e+0	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.16525.3.A1_x_at	At3g21460	deoxy xylulose synthase 2	-	7e-44	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.8291.1.A1_at	At3g21460	-	-	2e+0	At3g48630	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.19172.1.A1_at	At3g21460	hypothetical protein LOC100274312	-	7e-3	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.13032.1.A1_at	At3g21460	-	-	2e+0	At1g68907	-	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.15800.5.A1_at	At3g21460	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.5608.1.A1_at	At3g21460	-	-	8e+0	At4g17650	aromatic-rich family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.17364.1.A1_at	At3g21460	hsp20/alpha crystallin family protein	-	5e+0	At5g09560	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.5037.1.A1_a_at	At3g21460	histone deacetylase HDA110	-	4e-7	At3g18520	HDA15	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.719.2.S1_at	At3g21460	thioredoxin M1	-	4e-1	At1g11684	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.6128.1.A1_at	At3g21460	Hypothetical protein LOC100193503	-	5e-6	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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