CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3382.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g21460: electron carrier/ protein disulfide oxidoreductase (HF=4e+0)

Module size 6 genes

NF 0.92

%ile 99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.95 Ta.3382.1.S1_at AB042627.1 - - 4e+0 At3g21460 electron carrier/ protein disulfide oxidoreductase O.I. H.G. S.X.
0.91 98.2 0.96 Ta.23822.1.S1_at AF123603.1 - - 6e-2 At2g36026 - O.I. H.G. S.X.
0.91 98.2 0.96 Ta.3381.1.S1_at AF123602.1 - - 9e-1 At4g31940 CYP82C4 O.I. H.G. S.X.
0.83 93.4 0.97 Ta.1362.1.S1_at AB042631.1 - - 1e-2 At5g25130 CYP71B12 O.I. H.G. S.X.
0.77 90.8 0.94 Ta.3380.1.S1_at AB042629.1 - - 2e-2 At2g36026 - O.I. H.G. S.X.
0.77 90.8 0.94 Ta.23042.1.S1_x_at BE517350 - - 1e-2 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.8 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
22.6 99.8 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
20.0 99.7 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
19.7 99.7 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
15.4 99.6 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
12.4 99.4 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM314268 tissue type: seedling, leaf - rep3 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os08g0105800, orthologous to the query gene, Ta.3382.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 Os08g0105800 At3g21460 - E-class P450, group I family protein 7e-5 At3g44250 CYP71B38 O.I. H.G. S.X.
0.43 55.4 Os02g0570500 At3g21460 - Cytochrome P450 family protein 2e-4 At3g20130 CYP705A22 O.I. H.G. S.X.
0.12 7.2 Os07g0619400 At3g21460 - Calcium-binding EF-hand domain containing protein 9e-2 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.12 7.2 Os09g0559600 At3g21460 - Thioredoxin domain 2 containing protein 3e-1 At1g14630 unknown protein O.I. H.G. S.X.
0.10 5.7 Os03g0248200 At3g21460 - Cytochrome P450 family protein 9e-1 At3g26180 CYP71B20 O.I. H.G. S.X.
0.04 2.0 Os05g0405500 At3g21460 - E-class P450, group I family protein 6e-2 At1g17060 CYP72C1 (CYTOCHROME P450 72C1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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