Co-expression analysis

Gene ID	Ta.3382.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g21460: electron carrier/ protein disulfide oxidoreductase (HF=4e+0)
Module size	6 genes
NF	0.92
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.95	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	Ta.23822.1.S1_at	AF123603.1	-	-	6e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Ta.3380.1.S1_at	AB042629.1	-	-	2e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Ta.23042.1.S1_x_at	BE517350	-	-	1e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.0	99.8	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
22.6	99.8	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
19.7	99.7	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
15.4	99.6	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
12.4	99.4	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the barley gene, Contig11957_at, orthologous to the query gene, Ta.3382.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	Contig11957_at	At3g21460	-	-	5e-2	At3g48280	CYP71A25	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig8468_at	At3g21460	-	-	1e-12	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.	Please select
0.78	91.2	HR01A09u_at	At3g21460	-	-	2e+0	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.78	91.2	Contig11154_at	At3g21460	-	-	1e-15	At5g66210	CPK28	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig6325_at	At3g21460	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig12027_at	At3g21460	ORG4	-	2e-3	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	O.I.	H.G.	S.X.	Please select
0.55	72.0	HY02G07u_at	At3g21460	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig24268_at	At3g21460	-	-	2e+0	At5g57345	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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