CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3377.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g00600: tetrahydrofolate dehydrogenase/cyclohydrolase, putative (HF=1e-11)

Module size 15 genes

NF 0.35

%ile 56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 0.97 Ta.3377.1.S1_at CA649280 - - 1e-11 At4g00600 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.48 69.0 0.98 Ta.9175.1.S1_at BJ284678 - - 4e-95 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) O.I. H.G. S.X.
0.39 56.1 0.98 Ta.8547.1.S1_at M95747.1 initiation factor (iso)4f p82 subunit - 8e-15 At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative O.I. H.G. S.X.
0.38 54.7 0.98 Ta.12582.1.S1_at BQ171814 - - 2e+0 At5g51360 - O.I. H.G. S.X.
0.35 49.8 0.98 Ta.25019.1.S1_at BT009274.1 - - 9e-5 At2g23350 PAB4 (POLY(A) BINDING PROTEIN 4) O.I. H.G. S.X.
0.34 48.1 0.98 Ta.10045.1.S1_a_at CA604324 - - 1e-52 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.31 42.7 0.98 Ta.2136.1.S1_at BJ320333 - - 7e-9 At1g50200 ALATS (ALANYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.30 40.9 0.98 Ta.6963.3.S1_a_at CA649451 - - 1e-9 At3g18210 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.28 39.2 0.98 Ta.7894.1.S1_at CA678008 - - 1e-27 At2g45240 MAP1A (METHIONINE AMINOPEPTIDASE 1A) O.I. H.G. S.X.
0.28 39.2 0.98 Ta.2490.1.S1_at BJ250631 - - 4e-46 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) O.I. H.G. S.X.
0.25 32.1 0.98 TaAffx.98061.1.S1_s_at BG607189 - - 3e-1 At1g66140 ZFP4 (ZINC FINGER PROTEIN 4) O.I. H.G. S.X.
0.25 32.1 0.98 Ta.3049.3.S1_a_at CA690536 - - 4e+0 At3g17270 F-box family protein O.I. H.G. S.X.
0.23 29.0 0.98 Ta.9301.1.S1_at CK200112 - - 4e-25 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.23 29.0 0.98 Ta.1902.2.S1_a_at CK209206 - - 3e-4 At5g36230 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein O.I. H.G. S.X.
0.21 25.5 0.98 Ta.3227.2.S1_x_at CK198384 alternative splicing regulator - 1e-17 At1g09140 SF2/ASF-like splicing modulator (SRP30) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.9 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.9 97.3 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
4.9 97.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM298058 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0 94.3 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
2.8 93.6 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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