Co-expression analysis

Gene ID Ta.3366.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g15560: CLA1 (CLOROPLASTOS ALTERADOS 1) (HF=2e-8)
Module size 26 genes
NF 0.39
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7891.10.90Ta.3366.1.S1_atCK195723--2e-8At4g15560CLA1 (CLOROPLASTOS ALTERADOS 1)O.I.H.G.S.X.
0.5273.70.96Ta.21023.1.S1_s_atCA642252--1e+0At5g49280hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5173.00.94Ta.23424.1.S1_atCD453560--4e-7At2g47400CP12-1O.I.H.G.S.X.
0.4969.70.94Ta.6572.1.S1_a_atCK212997peroxiredoxin Q-2e-10At3g26060ATPRX QO.I.H.G.S.X.
0.4969.70.95Ta.5949.1.S1_atCD919637--6e-4At3g54660GR (GLUTATHIONE REDUCTASE)O.I.H.G.S.X.
0.4869.00.96Ta.1391.1.S1_x_atCA702000--2e-12At2g24090ribosomal protein L35 family proteinO.I.H.G.S.X.
0.4767.90.95Ta.27728.1.S1_atAF314182.2triose phosphate translocator-3e-22At5g46110APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)O.I.H.G.S.X.
0.4767.90.95Ta.14671.2.S1_a_atCK213901--2e+0At5g24170-O.I.H.G.S.X.
0.4767.90.95TaAffx.21371.1.S1_atBJ318198--8e-10At5g45170CbbY protein-relatedO.I.H.G.S.X.
0.4565.20.95Ta.17814.1.S1_atCA625092--3e-2At4g22830unknown proteinO.I.H.G.S.X.
0.4362.20.97Ta.28714.1.S1_atCK216318Thiol-specific antioxidant protein-3e-77At3g116302-cys peroxiredoxin, chloroplast (BAS1)O.I.H.G.S.X.
0.4362.20.95Ta.621.2.S1_atCK211230--8e+0At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.4159.60.95Ta.5949.1.S1_x_atCD919637--6e-4At3g54660GR (GLUTATHIONE REDUCTASE)O.I.H.G.S.X.
0.3956.10.95Ta.10886.1.A1_atBQ166757--4e+0At3g22050receptor-like protein kinase-relatedO.I.H.G.S.X.
0.3753.00.95Ta.9181.1.S1_atCK215974--2e-6At1g54580ACP2 (ACYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.3753.00.95Ta.1378.1.S1_atCK158480--2e+0At3g15190chloroplast 30S ribosomal protein S20, putativeO.I.H.G.S.X.
0.3244.40.95Ta.12695.1.S1_atCD373734--8e-3At5g54170-O.I.H.G.S.X.
0.3142.70.95Ta.27751.7.A1_x_atBG908738--6e-25At1g29910CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)O.I.H.G.S.X.
0.3040.90.96Ta.3258.1.S1_atCK208157--2e-4At5g54190PORAO.I.H.G.S.X.
0.3040.90.95Ta.4432.1.S1_s_atBJ229133--6e+0At5g16840BPA1 (BINDINGPARTNEROFACD11 1)O.I.H.G.S.X.
0.2735.60.95Ta.28558.1.S1_atCA680546--5e+0At1g07645ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN)O.I.H.G.S.X.
0.2735.60.96Ta.621.2.S1_x_atCK211230--8e+0At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.2532.10.97Ta.23411.1.S1_atBJ272562--3e-57At3g60750transketolase, putativeO.I.H.G.S.X.
0.2430.30.96Ta.28670.1.S1_x_atCA625828--4e-33At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)O.I.H.G.S.X.
0.2430.30.95TaAffx.21371.2.S1_s_atCA741418--8e-11At5g45170CbbY protein-relatedO.I.H.G.S.X.
0.2024.00.95Ta.28361.2.S1_atCK216267--8e+0At4g01150unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.199.7GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.697.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.397.6GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.297.5GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.197.5GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.596.9GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.596.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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