Co-expression analysis

Gene ID	Ta.3366.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g15560: CLA1 (CLOROPLASTOS ALTERADOS 1) (HF=2e-8)
Module size	26 genes
NF	0.39
%ile	63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.1	0.90	Ta.3366.1.S1_at	CK195723	-	-	2e-8	At4g15560	CLA1 (CLOROPLASTOS ALTERADOS 1)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.96	Ta.21023.1.S1_s_at	CA642252	-	-	1e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.94	Ta.23424.1.S1_at	CD453560	-	-	4e-7	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	Ta.6572.1.S1_a_at	CK212997	peroxiredoxin Q	-	2e-10	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.95	Ta.5949.1.S1_at	CD919637	-	-	6e-4	At3g54660	GR (GLUTATHIONE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	Ta.1391.1.S1_x_at	CA702000	-	-	2e-12	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	Ta.27728.1.S1_at	AF314182.2	triose phosphate translocator	-	3e-22	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	Ta.14671.2.S1_a_at	CK213901	-	-	2e+0	At5g24170	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	TaAffx.21371.1.S1_at	BJ318198	-	-	8e-10	At5g45170	CbbY protein-related	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.95	Ta.17814.1.S1_at	CA625092	-	-	3e-2	At4g22830	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.28714.1.S1_at	CK216318	Thiol-specific antioxidant protein	-	3e-77	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	Ta.621.2.S1_at	CK211230	-	-	8e+0	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.5949.1.S1_x_at	CD919637	-	-	6e-4	At3g54660	GR (GLUTATHIONE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.10886.1.A1_at	BQ166757	-	-	4e+0	At3g22050	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	Ta.9181.1.S1_at	CK215974	-	-	2e-6	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	Ta.1378.1.S1_at	CK158480	-	-	2e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	Ta.12695.1.S1_at	CD373734	-	-	8e-3	At5g54170	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	Ta.27751.7.A1_x_at	BG908738	-	-	6e-25	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.96	Ta.3258.1.S1_at	CK208157	-	-	2e-4	At5g54190	PORA	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.4432.1.S1_s_at	BJ229133	-	-	6e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.28558.1.S1_at	CA680546	-	-	5e+0	At1g07645	ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.621.2.S1_x_at	CK211230	-	-	8e+0	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.23411.1.S1_at	BJ272562	-	-	3e-57	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.28670.1.S1_x_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	TaAffx.21371.2.S1_s_at	CA741418	-	-	8e-11	At5g45170	CbbY protein-related	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	Ta.28361.2.S1_at	CK216267	-	-	8e+0	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.1	99.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.6	97.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.3	97.6	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.2	97.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.1	97.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5	96.9	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5	96.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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