Co-expression analysis

Gene ID	Ta.3348.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g14400: UBC1 (UBIQUITIN CARRIER PROTEIN 1) (HF=3e-52)
Module size	6 genes
NF	0.65
%ile	89.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.8	0.97	Ta.3348.1.S1_a_at	BJ314622	-	-	3e-52	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Ta.27783.1.S1_at	BQ237765	-	-	2e-19	At4g15415	ATB' GAMMA	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.8457.2.A1_at	BQ161925	-	-	1e+1	At4g00220	JLO (JAGGED LATERAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.97	TaAffx.11930.1.S1_s_at	CA639901	-	-	3e-5	At2g30330	GCN5L1 family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.8457.1.A1_at	BE430699	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.13995.1.S1_at	CK195574	-	-	1e-3	At5g56190	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.3	99.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
23.1	99.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.6	99.3	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.2	99.3	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
10.7	99.2	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage