Co-expression analysis

Gene ID Ta.3322.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g26850: dehydration-responsive family protein (HF=4e-50)
Module size 7 genes
NF 0.11
%ile 23.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.95Ta.3322.1.S1_s_atCK208679--4e-50At1g26850dehydration-responsive family proteinO.I.H.G.S.X.
0.5072.40.96Ta.3322.3.S1_a_atCA649562--2e-5At4g18030dehydration-responsive family proteinO.I.H.G.S.X.
0.4058.40.95Ta.9117.3.A1_x_atBJ230809--4e-3At5g49700DNA-binding protein-relatedO.I.H.G.S.X.
0.3549.80.95Ta.6945.1.A1_atBJ319268--3e+0At3g09940MDHAR (MONODEHYDROASCORBATE REDUCTASE)O.I.H.G.S.X.
0.2125.50.96Ta.9117.1.A1_a_atBJ216810--2e+0At1g51010unknown proteinO.I.H.G.S.X.
0.1213.30.95Ta.9685.1.S1_atBJ226436--7e-1At3g05520F-actin capping protein alpha subunit family proteinO.I.H.G.S.X.
0.023.60.95Ta.7685.1.A1_atCK166088--1e-63At4g16340SPK1 (SPIKE1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.9GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.3522.1.S1_at, orthologous to the query gene, Ta.3322.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.3522.1.S1_atAt1g26850--1e-19At4g00740dehydration-responsive protein-relatedO.I.H.G.S.X.
0.5571.6Zm.10312.1.A1_atAt1g26850cytosolic aldehyde dehydrogenase RF2D-4e-9At3g24503ALDH2C4O.I.H.G.S.X.
0.5369.1Zm.18319.1.A1_atAt1g26850hypothetical protein LOC100216754-2e+0At1g22190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4759.9Zm.809.1.A1_atAt1g26850calcium sensing receptor-1e-2At5g23060CaS (Calcium sensing receptor)O.I.H.G.S.X.
0.4658.4Zm.14295.1.A1_atAt1g26850ATP synthase epsilon chain, mitochondrial-3e-1At4g39403PLS (POLARIS)O.I.H.G.S.X.
0.2928.1Zm.4161.3.A1_a_atAt1g26850adhesive/proline-rich protein /// rhodopsin-3e-1At3g49845-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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