CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.3322.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At1g26850: dehydration-responsive family protein (HF=4e-50)

Module size 7 genes

NF 0.11

%ile 23.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.95 Ta.3322.1.S1_s_at CK208679 - - 4e-50 At1g26850 dehydration-responsive family protein O.I. H.G. S.X.
0.50 72.4 0.96 Ta.3322.3.S1_a_at CA649562 - - 2e-5 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.40 58.4 0.95 Ta.9117.3.A1_x_at BJ230809 - - 4e-3 At5g49700 DNA-binding protein-related O.I. H.G. S.X.
0.35 49.8 0.95 Ta.6945.1.A1_at BJ319268 - - 3e+0 At3g09940 MDHAR (MONODEHYDROASCORBATE REDUCTASE) O.I. H.G. S.X.
0.21 25.5 0.96 Ta.9117.1.A1_a_at BJ216810 - - 2e+0 At1g51010 unknown protein O.I. H.G. S.X.
0.12 13.3 0.95 Ta.9685.1.S1_at BJ226436 - - 7e-1 At3g05520 F-actin capping protein alpha subunit family protein O.I. H.G. S.X.
0.02 3.6 0.95 Ta.7685.1.A1_at CK166088 - - 1e-63 At4g16340 SPK1 (SPIKE1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.9 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
4.9 97.3 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
4.6 97.0 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.6 97.0 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.4 96.8 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM298059 Crown tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298060 Crown tissue of Harnesk at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1612756_at, orthologous to the query gene, Ta.3322.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 1612756_at At1g26850 hypothetical protein LOC100258541 - 1e-45 At1g26850 dehydration-responsive family protein O.I. H.G. S.X.
0.37 51.7 1608299_at At1g26850 hypothetical protein LOC100264505 - 2e-21 At2g19520 FVE O.I. H.G. S.X.
0.36 50.7 1615029_at At1g26850 - - 3e-34 At1g57720 elongation factor 1B-gamma, putative / eEF-1B gamma, putative O.I. H.G. S.X.
0.34 46.8 1621111_at At1g26850 hypothetical protein LOC100254821 - 2e+0 At4g33145 unknown protein O.I. H.G. S.X.
0.30 39.4 1613455_at At1g26850 - - 5e-69 At4g34570 THY-2 (thymidylate synthase 2) O.I. H.G. S.X.
0.30 39.4 1622817_at At1g26850 hypothetical protein LOC100251895 - 4e-42 At2g40660 tRNA-binding region domain-containing protein O.I. H.G. S.X.
0.30 39.4 1613765_at At1g26850 hypothetical protein LOC100262312 - 1e-3 At3g48750 CDC2 (CELL DIVISION CONTROL 2) O.I. H.G. S.X.
0.28 37.7 1614845_at At1g26850 hypothetical protein LOC100262902 - 1e+0 At1g65900 unknown protein O.I. H.G. S.X.
0.24 28.7 1616265_s_at At1g26850 - - 4e-20 At3g05060 SAR DNA-binding protein, putative O.I. H.G. S.X.
0.22 25.6 1606984_at At1g26850 hypothetical protein LOC100251815 - 8e-34 At5g49720 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) O.I. H.G. S.X.
0.17 18.2 1622390_at At1g26850 - - 2e-2 At5g17410 tubulin family protein O.I. H.G. S.X.
0.16 16.7 1608111_at At1g26850 hypothetical protein LOC100247823 - 1e+0 At1g24240 ribosomal protein L19 family protein O.I. H.G. S.X.
0.14 14.4 1618999_at At1g26850 hypothetical protein LOC100262446 - 1e-21 At4g02030 - O.I. H.G. S.X.
0.13 13.3 1619979_at At1g26850 hypothetical protein LOC100243832 - 3e-1 At4g25280 adenylate kinase family protein O.I. H.G. S.X.
0.12 12.1 1621149_at At1g26850 similar to 60S ribosomal protein L19 - 3e-79 At1g02780 emb2386 (embryo defective 2386) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage