Co-expression analysis

Gene ID	Ta.3322.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g26850: dehydration-responsive family protein (HF=4e-50)
Module size	7 genes
NF	0.11
%ile	23.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.95	Ta.3322.1.S1_s_at	CK208679	-	-	4e-50	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.3322.3.S1_a_at	CA649562	-	-	2e-5	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	Ta.9117.3.A1_x_at	BJ230809	-	-	4e-3	At5g49700	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	Ta.6945.1.A1_at	BJ319268	-	-	3e+0	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.96	Ta.9117.1.A1_a_at	BJ216810	-	-	2e+0	At1g51010	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.9685.1.S1_at	BJ226436	-	-	7e-1	At3g05520	F-actin capping protein alpha subunit family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.95	Ta.7685.1.A1_at	CK166088	-	-	1e-63	At4g16340	SPK1 (SPIKE1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.9	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.3868.1.A1_s_at, orthologous to the query gene, Ta.3322.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.3868.1.A1_s_at	At1g26850	hypothetical protein	-	5e-93	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.41501.1.S1_s_at	At1g26850	hypothetical protein	-	2e-21	At5g63680	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.217359.1.S1_at	At1g26850	hypothetical protein	-	3e-13	At1g62310	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.2607.1.S1_x_at	At1g26850	hypothetical protein	-	1e-11	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.5955.1.S1_at	At1g26850	hypothetical protein	-	2e-18	At4g28480	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.4195.1.S1_at	At1g26850	hypothetical protein	-	2e-25	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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