Co-expression analysis

Gene ID Ta.3322.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g26850: dehydration-responsive family protein (HF=4e-50)
Module size 7 genes
NF 0.11
%ile 23.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.95Ta.3322.1.S1_s_atCK208679--4e-50At1g26850dehydration-responsive family proteinO.I.H.G.S.X.
0.5072.40.96Ta.3322.3.S1_a_atCA649562--2e-5At4g18030dehydration-responsive family proteinO.I.H.G.S.X.
0.4058.40.95Ta.9117.3.A1_x_atBJ230809--4e-3At5g49700DNA-binding protein-relatedO.I.H.G.S.X.
0.3549.80.95Ta.6945.1.A1_atBJ319268--3e+0At3g09940MDHAR (MONODEHYDROASCORBATE REDUCTASE)O.I.H.G.S.X.
0.2125.50.96Ta.9117.1.A1_a_atBJ216810--2e+0At1g51010unknown proteinO.I.H.G.S.X.
0.1213.30.95Ta.9685.1.S1_atBJ226436--7e-1At3g05520F-actin capping protein alpha subunit family proteinO.I.H.G.S.X.
0.023.60.95Ta.7685.1.A1_atCK166088--1e-63At4g16340SPK1 (SPIKE1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.9GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g26850, orthologous to the query gene, Ta.3322.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6478.9At1g26850839229dehydration-responsive family proteinF:unknown;P:unknown;C:Golgi apparatus, membrane;PBOO.I.H.G.S.X.
0.6378.1At2g21390816678coatomer protein complex, subunit alpha, putativeF:protein binding, structural molecule activity, transporter activity;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane;MFOBPAO.I.H.G.S.X.
0.6176.7At1g67930843121Golgi transport complex protein-relatedF:unknown;P:unknown;C:chloroplast;OMFBPVO.I.H.G.S.X.
0.6075.7At1g05520837054transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:transport, response to salt stress;C:COPII vesicle coat;MFOPO.I.H.G.S.X.
0.5267.4At5g13390831180NEF1 (NO EXINE FORMATION 1)Required for normal pollen development and lipid accumulation within the tapetumO.I.H.G.S.X.
0.5166.3At3g51050824269FG-GAP repeat-containing proteinF:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPMO.I.H.G.S.X.
0.5065.3At1g04910839373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.4862.5At4g38200829976guanine nucleotide exchange family proteinF:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPBO.I.H.G.S.X.
0.4761.2At3g13290820529VCR (VARICOSE-RELATED)F:nucleotide binding;P:unknown;C:cellular_component unknown;MBOFPAO.I.H.G.S.X.
0.4659.8At3g05420819707ACBP4 (ACYL-COA BINDING PROTEIN 4)Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.O.I.H.G.S.X.
0.4253.9At2g30110817562ATUBA1Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling.O.I.H.G.S.X.
0.4253.9At3g15410820780leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;MPBOFAVO.I.H.G.S.X.
0.4152.4At5g63840836504RSW3 (RADIAL SWELLING 3)radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.O.I.H.G.S.X.
0.3948.4At1g56590842113clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3846.7At5g11490831021adaptin family proteinF:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3541.6At5g41950834200bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMBFPAVO.I.H.G.S.X.
0.3338.1At4g31480829275coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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