Co-expression analysis

Gene ID	Ta.3178.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g23320: WRKY15 (HF=1e+0)
Module size	34 genes
NF	0.25
%ile	41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.87	Ta.3178.1.S1_at	BJ303961	-	-	1e+0	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.89	Ta.25319.3.S1_at	CA594447	-	-	2e-5	At2g41040	methyltransferase-related	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.90	TaAffx.106154.2.S1_x_at	CA725477	-	-	4e+0	At4g30980	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.90	TaAffx.52820.1.S1_at	CA700528	-	-	2e-2	At1g01200	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.93	Ta.6434.2.S1_a_at	CA633721	-	-	1e-11	At4g29670	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	TaAffx.123914.1.S1_at	CN009931	-	-	1e+0	At4g05400	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.92	TaAffx.110096.1.S1_at	BE500775	-	-	6e-3	At2g45530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.90	TaAffx.109140.2.S1_at	CA679591	-	-	4e+0	At3g58540	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.88	TaAffx.53883.1.S1_at	CA688056	-	-	4e+0	At4g36990	HSF4 (HEAT SHOCK FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	TaAffx.80244.1.S1_at	CA699409	-	-	4e+0	At5g08060	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.108775.1.S1_at	CA684251	-	-	3e+0	At5g47570	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.91	Ta.23162.1.S1_at	CN008705	-	-	5e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.91	Ta.14061.1.S1_at	BQ806042	-	-	1e+0	At4g22666	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.93	TaAffx.111027.1.S1_at	CA649587	-	-	4e+1	At5g28288	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.93	Ta.22932.2.S1_x_at	CA687934	-	-	1e+0	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.92	TaAffx.114009.1.S1_at	CA600107	-	-	1e+1	At2g18690	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	TaAffx.66587.1.S1_at	BG909343	-	-	2e+0	At1g02620	GTP-binding protein (SAR1A)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	Ta.22988.1.S1_at	CA692783	-	-	3e+0	At1g70830	MLP28 (MLP-LIKE PROTEIN 28)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	Ta.10343.3.S1_at	CA598392	-	-	4e+0	At2g39010	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.113218.1.S1_at	CA617187	-	-	5e-3	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	Ta.6594.2.S1_at	CA660418	-	-	4e+0	At1g25300	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.80668.1.S1_at	CA694164	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.110270.1.S1_at	CA661857	-	-	4e+0	At4g02360	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.91	TaAffx.135182.1.S1_at	CA673772	-	-	2e+1	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	Ta.636.3.S1_x_at	CA634739	-	-	3e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.93	TaAffx.15602.1.S1_at	BG909974	-	-	3e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.93	TaAffx.30193.1.S1_s_at	CA627226	-	-	4e+0	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.91	Ta.7193.2.S1_at	BG904530	-	-	3e+0	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.92	Ta.19752.1.A1_at	CD374106	-	-	2e+0	At1g62305	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.92	Ta.23108.3.S1_x_at	CA695980	-	-	4e+0	At5g26870	AGL26	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.93	TaAffx.30186.1.S1_at	CA627286	-	-	7e-1	At1g65484	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.95	Ta.12695.1.S1_at	CD373734	-	-	8e-3	At5g54170	-	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	Ta.2825.3.S1_x_at	CA655458	-	-	4e+0	At5g25240	-	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.95	Ta.28670.1.S1_x_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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