Co-expression analysis

Gene ID	Ta.30921.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g09400: 12-oxophytodienoate reductase, putative (HF=2e-4)
Module size	8 genes
NF	0.54
%ile	80.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	75.5	0.83	Ta.30921.1.S1_x_at	CN012317	-	-	2e-4	At1g09400	12-oxophytodienoate reductase, putative	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.86	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.83	Ta.2278.2.S1_x_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.81	Ta.2278.2.S1_a_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.81	Ta.25627.1.A1_at	CD373418	-	-	8e-2	At2g45050	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.82	Ta.87.1.S1_x_at	BE404592	-	-	2e-3	At3g05950	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.81	Ta.87.1.S1_at	BE404592	-	-	2e-3	At3g05950	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.81	Ta.3160.1.S1_at	BJ223960	-	-	5e+0	At4g10870	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.6	99.9	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
31.4	99.9	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
22.5	99.8	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
8.2	98.8	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.8	98.4	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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