Co-expression analysis

Gene ID	Ta.30888.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g05920: DNA binding (HF=1e+0)
Module size	8 genes
NF	0.20
%ile	34.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.8	0.95	Ta.30888.1.S1_at	CN011455	-	-	1e+0	At1g05920	DNA binding	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	TaAffx.19604.1.A1_at	BJ309279	-	-	3e-1	At5g47090	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.3652.1.A1_at	BJ221482	-	-	1e+0	At4g07390	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.13976.1.S1_a_at	BQ172016	-	-	4e+0	At5g23100	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.10821.1.S1_at	CA627799	-	-	1e-1	At3g61113	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	Ta.4995.2.S1_x_at	CA736274	-	-	6e-1	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.96	Ta.20467.1.S1_at	CA656553	-	-	9e+0	At5g23600	tRNA 2'phosphotransferase, putative	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.27928.1.S1_at	CD897790	-	-	2e+1	At3g52510	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.3	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9	99.1	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.1	97.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.9	96.1	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.1	94.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage