Co-expression analysis

Gene ID	Ta.30799.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=6e-2)
Module size	7 genes
NF	0.61
%ile	86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.97	Ta.30799.3.S1_a_at	CA720672	-	-	6e-2	At5g54580	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Ta.7274.3.S1_a_at	AJ612375	-	-	1e-3	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	Ta.1286.2.S1_x_at	BQ606415	-	-	4e+0	At5g61412	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	TaAffx.91476.1.S1_at	BJ316914	-	-	7e-5	At3g17590	BSH (BUSHY GROWTH)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.4980.2.S1_a_at	CA634686	-	-	4e+0	At4g33040	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.2207.2.S1_a_at	CA612248	-	-	5e-25	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	TaAffx.77390.1.S1_at	CD893386	histone deacetylase	-	1e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.3	96.7	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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