Co-expression analysis

Gene ID	Ta.30790.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g12665: - (HF=1e-1)
Module size	6 genes
NF	0.82
%ile	97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.91	Ta.30790.1.S1_a_at	CK195596	-	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.91	Ta.30790.2.S1_at	CD919145	-	-	2e-1	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.92	TaAffx.8112.2.S1_s_at	CA723801	-	-	1e+1	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.91	TaAffx.8112.1.S1_x_at	BQ801783	-	-	2e+1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	Ta.30790.1.S1_at	CK195596	-	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.14005.1.S1_x_at	CK216207	-	-	2e+1	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.6	99.7	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
17.3	99.6	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
14.1	99.5	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
10.6	99.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.8	96.0	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the maize gene, Zm.11634.1.A1_at, orthologous to the query gene, Ta.30790.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.11634.1.A1_at	At1g12665	Hypothetical protein LOC100192517	-	3e+0	At4g38570	PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.13272.1.S1_a_at	At1g12665	dTDP-glucose 4,6-dehydratase	-	1e-58	At1g08200	AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.13270.1.A1_at	At1g12665	-	-	4e-13	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.8633.2.A1_x_at	At1g12665	-	-	4e+0	At5g52730	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.11960.1.A1_at	At1g12665	-	-	9e-1	At1g68260	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.1820.1.S1_at	At1g12665	-	-	2e-3	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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