Co-expression analysis

Gene ID Ta.30790.1.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At1g12665: - (HF=1e-1)
Module size 6 genes
NF 0.82
%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6383.10.91Ta.30790.1.S1_a_atCK195596--1e-1At1g12665-O.I.H.G.S.X.
0.9198.20.91Ta.30790.2.S1_atCD919145--2e-1At3g58850PAR2 (PHY RAPIDLY REGULATED 2)O.I.H.G.S.X.
0.9198.20.92TaAffx.8112.2.S1_s_atCA723801--1e+1At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.7790.80.91TaAffx.8112.1.S1_x_atBQ801783--2e+1At4g32930unknown proteinO.I.H.G.S.X.
0.7790.80.92Ta.30790.1.S1_atCK195596--1e-1At1g12665-O.I.H.G.S.X.
0.5072.40.96Ta.14005.1.S1_x_atCK216207--2e+1At5g45550mob1/phocein family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.699.7GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
17.399.6GSM314274tissue type: floral bracts, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
14.199.5GSM314272tissue type: floral bracts, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
10.699.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.998.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.297.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM298089Leaf tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.997.3GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
3.896.0GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1619196_at, orthologous to the query gene, Ta.30790.1.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81619196_atAt1g12665--1e-15At1g12070Rho GDP-dissociation inhibitor family proteinO.I.H.G.S.X.
0.2734.01610777_atAt1g12665hypothetical protein LOC100263956-2e-42At3g13670protein kinase family proteinO.I.H.G.S.X.
0.056.01612774_atAt1g12665hypothetical protein LOC100261536-2e+0At5g40900unknown proteinO.I.H.G.S.X.
0.012.11611379_atAt1g12665hypothetical protein LOC100242169-9e-2At5g61500ATG3O.I.H.G.S.X.
0.012.11619153_atAt1g12665hypothetical protein LOC100247333-3e-1At5g50410unknown proteinO.I.H.G.S.X.
0.012.11608925_atAt1g12665--5e+0At5g05987PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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