Co-expression analysis

Gene ID	Ta.3078.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g28380: leucine-rich repeat family protein (HF=1e+0)
Module size	6 genes
NF	0.58
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.3078.3.S1_a_at	CA677744	-	-	1e+0	At4g28380	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	TaAffx.81976.1.S1_s_at	CA679498	-	-	1e+0	At4g24950	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.77901.1.S1_s_at	CA740965	-	-	3e-1	At1g17370	UBP1B (oligouridylate binding protein 1B)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.24123.2.S1_at	BE517942	-	-	6e+0	At5g51900	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.6277.2.S1_at	BJ301167	-	-	2e-16	At5g17410	tubulin family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.5581.3.S1_at	BJ232695	-	-	1e-5	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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