Co-expression analysis

Gene ID	Ta.3074.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g40290: eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (HF=1e-3)
Module size	17 genes
NF	0.58
%ile	84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	0.91	Ta.3074.2.S1_x_at	CA646915	-	-	1e-3	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.93	TaAffx.105943.1.S1_at	CA727514	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.93	TaAffx.50318.1.S1_at	CA742779	-	-	3e+0	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.93	TaAffx.112440.1.S1_at	CA621396	-	-	4e-1	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.94	Ta.16453.1.S1_at	CA606648	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.93	TaAffx.112556.1.S1_at	CA622998	-	-	4e+0	At1g67760	ATP binding / protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.94	TaAffx.110665.1.S1_at	CA656430	-	-	4e+0	At2g33250	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.94	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.94	TaAffx.135182.1.S1_x_at	CA673772	-	-	2e+1	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.94	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.92	TaAffx.110614.4.S1_at	CA605907	-	-	3e-1	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.94	TaAffx.13785.2.S1_at	CA708591	-	-	7e-8	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.93	TaAffx.13750.2.A1_at	CA647055	-	-	4e+0	At5g51545	LPA2 (low psii accumulation2)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.93	TaAffx.108544.1.S1_x_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	TaAffx.108544.1.S1_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	TaAffx.51911.1.S1_at	CA716547	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
10.9	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.0	99.1	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.1	99.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
7.8	98.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.8	98.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.2	98.1	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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