Co-expression analysis

Gene ID Ta.3074.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At2g40290: eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (HF=1e-3)
Module size 17 genes
NF 0.58
%ile 84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.20.91Ta.3074.2.S1_x_atCA646915--1e-3At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.
0.7790.80.93TaAffx.105943.1.S1_atCA727514--2e+1At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)O.I.H.G.S.X.
0.7389.10.93TaAffx.50318.1.S1_atCA742779--3e+0At3g25400-O.I.H.G.S.X.
0.6886.50.93TaAffx.112440.1.S1_atCA621396--4e-1At3g11050ATFER2 (ferritin 2)O.I.H.G.S.X.
0.6583.90.94Ta.16453.1.S1_atCA606648--1e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.6383.10.93TaAffx.112556.1.S1_atCA622998--4e+0At1g67760ATP binding / protein binding / unfolded protein bindingO.I.H.G.S.X.
0.6383.10.94TaAffx.110665.1.S1_atCA656430--4e+0At2g33250unknown proteinO.I.H.G.S.X.
0.6383.10.94TaAffx.64914.1.S1_atBJ270115--4e+0At1g51915cryptdin protein-relatedO.I.H.G.S.X.
0.6081.00.94TaAffx.135182.1.S1_x_atCA673772--2e+1At5g23640unknown proteinO.I.H.G.S.X.
0.6081.00.94TaAffx.105981.1.S1_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.5879.20.92TaAffx.110614.4.S1_atCA605907--3e-1At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.5678.60.94TaAffx.13785.2.S1_atCA708591--7e-8At2g34690ACD11 (ACCELERATED CELL DEATH 11)O.I.H.G.S.X.
0.5173.00.93TaAffx.13750.2.A1_atCA647055--4e+0At5g51545LPA2 (low psii accumulation2)O.I.H.G.S.X.
0.5173.00.93TaAffx.108544.1.S1_x_atCA663841--1e+1At4g27270quinone reductase family proteinO.I.H.G.S.X.
0.4969.70.94Ta.19591.2.A1_a_atCA651113--4e+0At5g11500unknown proteinO.I.H.G.S.X.
0.4767.90.93TaAffx.108544.1.S1_atCA663841--1e+1At4g27270quinone reductase family proteinO.I.H.G.S.X.
0.3346.90.93TaAffx.51911.1.S1_atCA716547--3e+0At1g78300GRF2 (GENERAL REGULATORY FACTOR 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.699.3GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
10.999.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
10.099.1GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
9.199.0GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.898.7GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
6.898.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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