Co-expression analysis

Gene ID	Ta.30735.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g76680: OPR1 (HF=2e-5)
Module size	6 genes
NF	0.28
%ile	45.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.80	Ta.30735.2.S1_at	CA604500	-	-	2e-5	At1g76680	OPR1	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.93	TaAffx.55497.1.S1_at	CA665286	-	-	3e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.20393.1.S1_x_at	CA485809	-	-	3e-1	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.94	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.93	Ta.26942.1.S1_at	CD491274	-	-	8e-46	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	99.1	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.3	98.8	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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