Co-expression analysis

Gene ID	Ta.30721.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g02540: RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) (HF=6e+0)
Module size	18 genes
NF	0.30
%ile	48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.95	Ta.30721.1.S1_x_at	CN013264	-	-	6e+0	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	TaAffx.61855.2.S1_at	CA614570	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	TaAffx.83463.1.S1_at	CA697862	-	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	TaAffx.91476.1.S1_at	BJ316914	-	-	7e-5	At3g17590	BSH (BUSHY GROWTH)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	TaAffx.61855.2.S1_x_at	CA614570	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	Ta.8151.3.S1_at	CA604633	-	-	4e+0	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.28571.1.S1_s_at	CA639817	-	-	8e-5	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.7163.3.S1_at	CA610267	-	-	7e-5	At3g11397	PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.3530.3.S1_a_at	BJ223674	-	-	7e-2	At1g19130	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.16493.1.A1_s_at	CA607256	-	-	3e-1	At1g78410	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.30799.3.S1_a_at	CA720672	-	-	6e-2	At5g54580	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.24358.1.S1_s_at	CA611190	-	-	3e+0	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.96	Ta.28311.2.S1_x_at	CA630222	Plasma membrane H+-ATPase subunit H	-	6e-5	At4g26710	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.13763.1.S1_at	BJ226403	-	-	2e+0	At3g08610	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.27696.1.A1_at	BJ298921	-	-	3e-1	At4g04614	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.23895.1.S1_at	CK205337	-	-	3e-55	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.23895.1.S1_x_at	CK205337	-	-	3e-55	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.97	Ta.3049.2.S1_a_at	CA641132	-	-	2e-8	At2g04940	scramblase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.7	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.7	98.4	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
6.6	98.3	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.7	95.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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