Co-expression analysis

Gene ID	Ta.30653.1.S1_at
Gene name	hypothetical LOC543043
Homology with Arabidopsis	Similar to At2g33870: ArRABA1h (Arabidopsis Rab GTPase homolog A1h) (HF=9e-2)
Module size	7 genes
NF	0.34
%ile	55.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.87	Ta.30653.1.S1_at	AJ606023.1	hypothetical LOC543043	-	9e-2	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.91	Ta.4480.2.S1_at	CA599963	-	-	1e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.90	TaAffx.119572.1.S1_at	BJ267765	-	-	4e+0	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.6956.2.S1_x_at	BJ304062	-	-	5e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.91	Ta.6956.2.S1_at	BJ304062	-	-	5e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.91	TaAffx.113398.1.S1_at	CA613502	-	-	3e-4	At1g18420	-	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.91	Ta.28561.2.S1_at	BJ244783	-	-	8e-1	At2g39520	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
44.9	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.9	98.4	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM138178	genotype A88 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM138175	genotype A81 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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