Co-expression analysis

Gene ID Ta.30606.1.A1_at
Gene name hypothetical LOC543377
Homology with ArabidopsisSimilar to At3g44190: pyridine nucleotide-disulphide oxidoreductase family protein (HF=4e-4)
Module size 28 genes
NF 0.43
%ile 68.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8994.60.85Ta.30606.1.A1_atAJ606031.1hypothetical LOC543377-4e-4At3g44190pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.6886.50.89Ta.7302.2.S1_atBE428343--1e+0At3g29300unknown proteinO.I.H.G.S.X.
0.5779.20.89TaAffx.4083.2.S1_atCA744655--3e-13At2g14740ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)O.I.H.G.S.X.
0.5678.60.87Ta.12509.2.S1_atCA740611--2e+0At5g14550unknown proteinO.I.H.G.S.X.
0.5173.00.90TaAffx.22864.1.S1_atCA744032--4e+0At5g14800P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)O.I.H.G.S.X.
0.5173.00.90Ta.7560.2.A1_atCA735981--1e+0At1g76440-O.I.H.G.S.X.
0.5173.00.91Ta.6692.2.A1_atCA678021--1e-6At4g36960RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4869.00.88TaAffx.28018.1.S1_atCA666386--1e+0At3g05280integral membrane Yip1 family proteinO.I.H.G.S.X.
0.4869.00.92TaAffx.78296.1.S1_atCA734700--8e-1At5g45700NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.4767.90.93TaAffx.84709.1.S1_atCA630743--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.4565.20.88Ta.6402.3.A1_atCA630707--2e-2At3g09740SYP71 (SYNTAXIN OF PLANTS 71)O.I.H.G.S.X.
0.4464.50.89TaAffx.80394.1.S1_atCA697325--1e+0At1g16640transcriptional factor B3 family proteinO.I.H.G.S.X.
0.4464.50.91Ta.5052.3.S1_atCA738890--3e-1At1g06240unknown proteinO.I.H.G.S.X.
0.4464.50.91Ta.13274.2.A1_atCA613778--7e-2At5g05360unknown proteinO.I.H.G.S.X.
0.4362.20.90Ta.8773.3.S1_atCA662434--2e+1At5g22280unknown proteinO.I.H.G.S.X.
0.4260.90.91Ta.14271.2.A1_atCA726402--2e-26At5g46210CUL4 (CULLIN4)O.I.H.G.S.X.
0.3854.70.90Ta.3378.2.A1_atCA666300--2e-1At5g12390FIS1B (FISSION 1B)O.I.H.G.S.X.
0.3753.00.90TaAffx.109318.1.S1_atCA677119--4e+0At2g14560LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)O.I.H.G.S.X.
0.3753.00.92Ta.28190.2.S1_a_atCA654134--7e-2At5g07620protein kinase family proteinO.I.H.G.S.X.
0.3753.00.91TaAffx.78266.1.S1_atCA735361--2e-4At3g25480rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.3651.90.91Ta.11430.1.S1_atCA637362--4e+0At4g39860unknown proteinO.I.H.G.S.X.
0.3346.90.90Ta.5530.3.A1_atCA630457--4e+0At3g27090-O.I.H.G.S.X.
0.3244.40.90TaAffx.12923.2.S1_atCA696114--7e-8At1g16740ribosomal protein L20 family proteinO.I.H.G.S.X.
0.2939.20.91TaAffx.4083.3.S1_atCA633558--7e-5At2g14720VSR-2O.I.H.G.S.X.
0.2939.20.89Ta.23282.2.A1_atCA593333--4e-1At5g12940leucine-rich repeat family proteinO.I.H.G.S.X.
0.2839.20.90TaAffx.23474.1.S1_atCA734776--1e-2At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
0.2633.60.91Ta.4970.2.S1_atCD935660--1e+0At5g62750unknown proteinO.I.H.G.S.X.
0.2024.00.91Ta.21296.2.S1_atCD918312--2e+0At4g09260unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.399.0GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.998.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.294.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.994.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage