Co-expression analysis

Gene ID	Ta.3057.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g04800: glycine-rich protein (HF=3e+0)
Module size	16 genes
NF	0.35
%ile	56.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	92.7	0.95	Ta.3057.1.S1_at	BJ214808	-	-	3e+0	At1g04800	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.96	TaAffx.49165.1.S1_x_at	CA640875	-	-	2e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.27026.1.S1_s_at	BT008919.1	-	-	1e+1	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.6439.1.A1_x_at	BJ311211	-	-	3e+0	At5g57150	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.27758.1.A1_at	CD913153	-	-	5e+0	At5g64780	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.96	Ta.20364.1.S1_at	CA679058	-	-	1e+1	At4g03170	DNA binding	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.96	Ta.9630.2.S1_at	CA691213	-	-	2e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.96	Ta.7861.2.S1_a_at	CA692192	-	-	9e-1	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.22953.1.S1_a_at	BJ247849	-	-	9e+0	At5g48540	33 kDa secretory protein-related	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	Ta.18914.3.A1_at	CA666584	-	-	4e+0	At5g59500	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.3463.1.S1_x_at	BQ753035	-	-	4e-20	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.25854.1.S1_at	CD453706	-	-	5e-15	At1g05940	CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.9297.1.S1_at	BJ321859	-	-	2e+0	At2g07669	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.2361.1.S1_at	CK198765	-	-	2e-36	At3g45180	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.7444.1.A1_at	BJ320657	-	-	4e+0	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.2875.1.S1_at	BJ218980	-	-	6e-38	At2g19830	SNF7.2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.1	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.1	96.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage