Co-expression analysis

Gene ID	Ta.30411.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62280: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.30411.1.S1_at	CK209297	-	-	5e+0	At5g62280	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	TaAffx.78517.1.S1_at	CA731451	-	-	4e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	TaAffx.51594.1.S1_at	CA723204	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	99.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
12.6	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.1	99.4	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
11.7	99.3	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.7	98.7	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.16934.1.A1_at, orthologous to the query gene, Ta.30411.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.16934.1.A1_at	At5g62280	transcriptional regulatory protein algP	-	3e-1	At4g03580	-	O.I.	H.G.	S.X.	Please select
0.91	99.0	Zm.354.2.S1_at	At5g62280	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.4619.2.A1_a_at	At5g62280	hypothetical protein LOC100273548	-	5e-29	At4g31120	SKB1 (SHK1 BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.12387.1.S1_at	At5g62280	-	-	2e+1	Atmg01300	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.17115.1.S1_at	At5g62280	-	-	1e+0	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.17270.1.S1_a_at	At5g62280	zein-alpha precursor	-	5e-1	At1g06070	bZIP transcription factor, putative (bZIP69)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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