CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.30411.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g62280: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.68

%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.96 Ta.30411.1.S1_at CK209297 - - 5e+0 At5g62280 unknown protein O.I. H.G. S.X.
0.80 92.2 0.96 TaAffx.78517.1.S1_at CA731451 - - 4e+0 At2g25720 unknown protein O.I. H.G. S.X.
0.67 86.3 0.96 TaAffx.105451.1.S1_at CA734135 - - 1e+0 At3g06730 thioredoxin family protein O.I. H.G. S.X.
0.55 76.8 0.96 TaAffx.73323.1.S1_at CA713945 - - 3e+0 At5g45870 Bet v I allergen family protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.118620.1.S1_at BJ316617 - - 1e+0 At2g31560 unknown protein O.I. H.G. S.X.
0.44 64.5 0.96 TaAffx.51594.1.S1_at CA723204 - - 1e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.6 99.4 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
12.6 99.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.1 99.4 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
11.7 99.3 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
8.9 99.0 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.7 98.7 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.7 97.9 GSM298093 Crown tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the rice gene, Os04g0413900, orthologous to the query gene, Ta.30411.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 Os04g0413900 At5g62280 - - 2e-1 At3g14480 glycine/proline-rich protein O.I. H.G. S.X.
0.52 69.6 Os03g0723600 At5g62280 - Hypothetical protein 1e-2 At2g23320 WRKY15 O.I. H.G. S.X.
0.35 41.7 Os08g0483100 At5g62280 - Conserved hypothetical protein 9e-3 At3g44140 unknown protein O.I. H.G. S.X.
0.21 17.9 Os02g0130300 At5g62280 - Zn-finger, RING domain containing protein 2e-1 At1g72750 ATTIM23-2 O.I. H.G. S.X.
0.20 16.5 Os11g0209200 At5g62280 - Ribosomal RNA apurinic site specific lyase 4e+0 At5g35631 unknown protein O.I. H.G. S.X.
0.20 16.5 Os04g0476800 At5g62280 - TA5 protein (Fragment) 2e-3 At4g24690 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein O.I. H.G. S.X.
0.19 15.1 Os08g0500500 At5g62280 - Hypothetical protein 1e+0 At1g13310 - O.I. H.G. S.X.
0.17 12.6 Os01g0767100 At5g62280 - Lysosomal Pro-X carboxypeptidase 7e-11 At5g65760 serine carboxypeptidase S28 family protein O.I. H.G. S.X.
0.13 8.2 Os05g0494100 At5g62280 - Transcription factor CBF/NF-Y/archaeal histonedomain containing protein 7e-10 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) O.I. H.G. S.X.
0.11 6.5 Os08g0440300 At5g62280 - Hypothetical protein 5e-6 At1g80780 CCR4-NOT transcription complex protein, putative O.I. H.G. S.X.
0.07 3.7 Os10g0500300 At5g62280 - MTD2 3e+0 At3g61470 LHCA2 O.I. H.G. S.X.
0.06 3.0 Os04g0537900 At5g62280 - C13 endopeptidase NP1 (Fragment) 1e-6 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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